miRNA display CGI


Results 21 - 40 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 43801 0.69 0.627169
Target:  5'- aAGGGGGGCCgCCaugucgcagcagccgGGUCagccgccgccgGCCGcGGGCCCg -3'
miRNA:   3'- aUUUUCCCGG-GG---------------CCAG-----------CGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 43859 0.69 0.623339
Target:  5'- ---cAGGcGCCCCGGcCGgcucCCGGGccgucGCCCa -3'
miRNA:   3'- auuuUCC-CGGGGCCaGC----GGCCC-----UGGG- -5'
13936 3' -61.2 NC_003521.1 + 44095 0.69 0.642489
Target:  5'- ----cGGGCCCgCGGcCGgCGGcggcuGACCCg -3'
miRNA:   3'- auuuuCCCGGG-GCCaGCgGCC-----CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 44132 0.66 0.789856
Target:  5'- ----uGGGCgacggCCCGGgagccgGCCGGGGCgCCu -3'
miRNA:   3'- auuuuCCCG-----GGGCCag----CGGCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 45998 0.66 0.822918
Target:  5'- ---cAGGGUCUCGGccaguccgUCGCgGGGGUCCu -3'
miRNA:   3'- auuuUCCCGGGGCC--------AGCGgCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 46550 0.72 0.465953
Target:  5'- ---cAGGGCCUCG--CGCCGGGugCUg -3'
miRNA:   3'- auuuUCCCGGGGCcaGCGGCCCugGG- -5'
13936 3' -61.2 NC_003521.1 + 46799 0.66 0.81405
Target:  5'- ----cGaGGCCCUGGUgCGCCuGGagaagacGCCCg -3'
miRNA:   3'- auuuuC-CCGGGGCCA-GCGGcCC-------UGGG- -5'
13936 3' -61.2 NC_003521.1 + 54169 0.74 0.353191
Target:  5'- aAGGGGGGCgCCGGUgGCgGGGGCg- -3'
miRNA:   3'- aUUUUCCCGgGGCCAgCGgCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 59226 0.7 0.572835
Target:  5'- ---cGGGGCCCUGGaCGCCcuggaggugaacguGGGGCUg -3'
miRNA:   3'- auuuUCCCGGGGCCaGCGG--------------CCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 59883 0.66 0.772551
Target:  5'- ----cGaGCCgCGGUcgcCGCCGGGGCCg -3'
miRNA:   3'- auuuuCcCGGgGCCA---GCGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 61831 0.77 0.244146
Target:  5'- -cGAGGGGCCCUGGgagggCGCCGcGGAaCCg -3'
miRNA:   3'- auUUUCCCGGGGCCa----GCGGC-CCUgGG- -5'
13936 3' -61.2 NC_003521.1 + 62235 0.67 0.763731
Target:  5'- cAGGAGGGCgCCCGGcuggacgCGCgGcuggagaaGGACCUg -3'
miRNA:   3'- aUUUUCCCG-GGGCCa------GCGgC--------CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 62965 0.67 0.718243
Target:  5'- ----uGGGCCUCGGgcagGgCGGGuCCCg -3'
miRNA:   3'- auuuuCCCGGGGCCag--CgGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 63069 0.71 0.519679
Target:  5'- cGGAGGcGGCCaCGGUcgucaaagaCGCCGGG-CCCg -3'
miRNA:   3'- aUUUUC-CCGGgGCCA---------GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 63323 0.71 0.519679
Target:  5'- ---cGGGGUCgCGGUCGUcgccagggccgaCGGGGCCUg -3'
miRNA:   3'- auuuUCCCGGgGCCAGCG------------GCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 63534 0.67 0.74579
Target:  5'- ------uGCaCCCGGUCGCCGaggaaGGACUCg -3'
miRNA:   3'- auuuuccCG-GGGCCAGCGGC-----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 63809 0.71 0.501475
Target:  5'- cGAGGGcGGCUCCGuGaCGCUGGG-CCCa -3'
miRNA:   3'- aUUUUC-CCGGGGC-CaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 67451 0.66 0.772551
Target:  5'- uUGAGcAGGGUgUUGGUucgggcggcUGCgCGGGACCCa -3'
miRNA:   3'- -AUUU-UCCCGgGGCCA---------GCG-GCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 68691 0.78 0.203309
Target:  5'- -uGAGGGGCgCCGGcggagccgUCGCCgcGGGACCCg -3'
miRNA:   3'- auUUUCCCGgGGCC--------AGCGG--CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 68826 0.66 0.780396
Target:  5'- ----cGGGCCCUGGcacaGUCGGucaacgaGACCCu -3'
miRNA:   3'- auuuuCCCGGGGCCag--CGGCC-------CUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.