miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 141573 0.73 0.415251
Target:  5'- gAAGAGGGCUCCGGggCGCC---GCCCg -3'
miRNA:   3'- aUUUUCCCGGGGCCa-GCGGcccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 155257 0.73 0.431779
Target:  5'- ---cAGGGCUUCGGUcugCGUCGGGgaGCCCa -3'
miRNA:   3'- auuuUCCCGGGGCCA---GCGGCCC--UGGG- -5'
13936 3' -61.2 NC_003521.1 + 46550 0.72 0.465953
Target:  5'- ---cAGGGCCUCG--CGCCGGGugCUg -3'
miRNA:   3'- auuuUCCCGGGGCcaGCGGCCCugGG- -5'
13936 3' -61.2 NC_003521.1 + 228338 0.72 0.465953
Target:  5'- ----cGGcGCCUCGGacgugaGCUGGGACCCg -3'
miRNA:   3'- auuuuCC-CGGGGCCag----CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 138342 0.72 0.469447
Target:  5'- cUGGGAGGGCCagcgCCucagcuguccgcggcGGUCGCgGGcGACCCa -3'
miRNA:   3'- -AUUUUCCCGG----GG---------------CCAGCGgCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 142132 0.72 0.480896
Target:  5'- --uGAGGGCCUgguggcuggugaggCGGU-GCCGGGAgCCg -3'
miRNA:   3'- auuUUCCCGGG--------------GCCAgCGGCCCUgGG- -5'
13936 3' -61.2 NC_003521.1 + 204393 0.71 0.492479
Target:  5'- ----cGGGCUCCGG-CGCCuGG-CCCg -3'
miRNA:   3'- auuuuCCCGGGGCCaGCGGcCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 63809 0.71 0.501475
Target:  5'- cGAGGGcGGCUCCGuGaCGCUGGG-CCCa -3'
miRNA:   3'- aUUUUC-CCGGGGC-CaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 3928 0.71 0.501475
Target:  5'- --cGAGGGUCCCGGcCGCCGaGGCa- -3'
miRNA:   3'- auuUUCCCGGGGCCaGCGGCcCUGgg -5'
13936 3' -61.2 NC_003521.1 + 227175 0.71 0.510544
Target:  5'- gGAGGGGGCCgcggaggccgcgCUGGcCGCCGuGGugCCc -3'
miRNA:   3'- aUUUUCCCGG------------GGCCaGCGGC-CCugGG- -5'
13936 3' -61.2 NC_003521.1 + 63323 0.71 0.519679
Target:  5'- ---cGGGGUCgCGGUCGUcgccagggccgaCGGGGCCUg -3'
miRNA:   3'- auuuUCCCGGgGCCAGCG------------GCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 33932 0.71 0.519679
Target:  5'- ----cGGGCCacggCCGGUCGCUGGauCCCg -3'
miRNA:   3'- auuuuCCCGG----GGCCAGCGGCCcuGGG- -5'
13936 3' -61.2 NC_003521.1 + 124483 0.71 0.519679
Target:  5'- gAAucGGG-CCCGGUCGCgGgccagaaaGGGCCCg -3'
miRNA:   3'- aUUuuCCCgGGGCCAGCGgC--------CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 232827 0.71 0.519679
Target:  5'- ----cGGcgcuGCCCCGGUaccucccccgcCGCCGcGGACCCc -3'
miRNA:   3'- auuuuCC----CGGGGCCA-----------GCGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 218484 0.71 0.519679
Target:  5'- ---cAGuGGCCCCGGaCGUCGGGAaaggcgaaCCa -3'
miRNA:   3'- auuuUC-CCGGGGCCaGCGGCCCUg-------GG- -5'
13936 3' -61.2 NC_003521.1 + 63069 0.71 0.519679
Target:  5'- cGGAGGcGGCCaCGGUcgucaaagaCGCCGGG-CCCg -3'
miRNA:   3'- aUUUUC-CCGGgGCCA---------GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 128100 0.71 0.528879
Target:  5'- ----cGGGCU--GG-CGCCGGGGCCCu -3'
miRNA:   3'- auuuuCCCGGggCCaGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 150488 0.71 0.528879
Target:  5'- ---uGGGGCCCuucagcuuuuaCGG-CGCCggcGGGGCCCu -3'
miRNA:   3'- auuuUCCCGGG-----------GCCaGCGG---CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 123612 0.71 0.538137
Target:  5'- cGGAGGccacGGCCgCGG-CGCUGGGGCCg -3'
miRNA:   3'- aUUUUC----CCGGgGCCaGCGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 129826 0.7 0.547451
Target:  5'- ----uGGGCCgCCuGcUGCUGGGGCCCg -3'
miRNA:   3'- auuuuCCCGG-GGcCaGCGGCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.