miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 197467 0.66 0.781262
Target:  5'- gGGAAGGaagaaGUCCCG--CGCUGGGACCg -3'
miRNA:   3'- aUUUUCC-----CGGGGCcaGCGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 197380 0.67 0.7275
Target:  5'- -uGGAGaGGCUCUGGcUCGCCgcccGGGACUg -3'
miRNA:   3'- auUUUC-CCGGGGCC-AGCGG----CCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 191777 0.67 0.754807
Target:  5'- --cGAGcGCCCCGGUCGCauucgacgucucUGGGAaugCCg -3'
miRNA:   3'- auuUUCcCGGGGCCAGCG------------GCCCUg--GG- -5'
13936 3' -61.2 NC_003521.1 + 191492 0.66 0.814863
Target:  5'- aGGAAGGcGUCaCCGG-CGCUgGGGACgCg -3'
miRNA:   3'- aUUUUCC-CGG-GGCCaGCGG-CCCUGgG- -5'
13936 3' -61.2 NC_003521.1 + 189951 0.66 0.772551
Target:  5'- ----cGGGCCgCCGaGcCGUuccucaGGGACCCg -3'
miRNA:   3'- auuuuCCCGG-GGC-CaGCGg-----CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 187528 0.68 0.698604
Target:  5'- ----cGGGCCgagaacuacgagaUCGuGUCGCCGGcACCCa -3'
miRNA:   3'- auuuuCCCGG-------------GGC-CAGCGGCCcUGGG- -5'
13936 3' -61.2 NC_003521.1 + 186639 0.66 0.789856
Target:  5'- cGGucGGGCUgcuccuCCGGUUGaCacaGGGGCCCc -3'
miRNA:   3'- aUUuuCCCGG------GGCCAGC-Gg--CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 179480 0.66 0.789856
Target:  5'- cUGAcGGGuacGCUCCGGcagCGCCGGGGaacacguguCCCa -3'
miRNA:   3'- -AUUuUCC---CGGGGCCa--GCGGCCCU---------GGG- -5'
13936 3' -61.2 NC_003521.1 + 173033 0.68 0.671142
Target:  5'- ----cGGcGcCCCCGGUggcagccagaaUGCCGGGcCCCg -3'
miRNA:   3'- auuuuCC-C-GGGGCCA-----------GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 172985 0.68 0.699544
Target:  5'- ----cGGGCCgCCuucugGGUCG-CGGGGCUCa -3'
miRNA:   3'- auuuuCCCGG-GG-----CCAGCgGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 172772 0.66 0.798326
Target:  5'- ----uGGcuGCCaCCGGgggCGCCGcGGACCa -3'
miRNA:   3'- auuuuCC--CGG-GGCCa--GCGGC-CCUGGg -5'
13936 3' -61.2 NC_003521.1 + 168945 0.66 0.806664
Target:  5'- ---cAGGGCCgCCGcuGUCGCCGucGCUCc -3'
miRNA:   3'- auuuUCCCGG-GGC--CAGCGGCccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 167474 0.69 0.652056
Target:  5'- aGAGGGaaGGCCUgaCGGUCGUCGGG-CCg -3'
miRNA:   3'- aUUUUC--CCGGG--GCCAGCGGCCCuGGg -5'
13936 3' -61.2 NC_003521.1 + 167013 0.66 0.814863
Target:  5'- gUAGAAGG--UCCGGUUGCCGGcGACg- -3'
miRNA:   3'- -AUUUUCCcgGGGCCAGCGGCC-CUGgg -5'
13936 3' -61.2 NC_003521.1 + 165221 0.7 0.556815
Target:  5'- aAAGAGGGCCCucuccggcgacgCGaGcCGCCggaggaGGGGCCCg -3'
miRNA:   3'- aUUUUCCCGGG------------GC-CaGCGG------CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 164935 0.7 0.563397
Target:  5'- ----cGGGCCCCuccuccggcggcucGcGUCGCCGgagaGGGCCCu -3'
miRNA:   3'- auuuuCCCGGGG--------------C-CAGCGGC----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 164791 0.68 0.690117
Target:  5'- ----cGGGCaCgGGUCGUCGGGGacgauCCCg -3'
miRNA:   3'- auuuuCCCGgGgCCAGCGGCCCU-----GGG- -5'
13936 3' -61.2 NC_003521.1 + 164749 0.75 0.297983
Target:  5'- gAGGGGGGCaUCgCGGUCGCCGGGcgaACCa -3'
miRNA:   3'- aUUUUCCCG-GG-GCCAGCGGCCC---UGGg -5'
13936 3' -61.2 NC_003521.1 + 155257 0.73 0.431779
Target:  5'- ---cAGGGCUUCGGUcugCGUCGGGgaGCCCa -3'
miRNA:   3'- auuuUCCCGGGGCCA---GCGGCCC--UGGG- -5'
13936 3' -61.2 NC_003521.1 + 154695 0.73 0.399116
Target:  5'- aAGAAGGGCCagCGGUCGaCgCGGGggacgcgcguGCCCg -3'
miRNA:   3'- aUUUUCCCGGg-GCCAGC-G-GCCC----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.