miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 233110 0.66 0.822918
Target:  5'- cGGGAGGGUCCgCGG-CGgCGGGGgagguaCCg -3'
miRNA:   3'- aUUUUCCCGGG-GCCaGCgGCCCUg-----GG- -5'
13936 3' -61.2 NC_003521.1 + 232827 0.71 0.519679
Target:  5'- ----cGGcgcuGCCCCGGUaccucccccgcCGCCGcGGACCCc -3'
miRNA:   3'- auuuuCC----CGGGGCCA-----------GCGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 228338 0.72 0.465953
Target:  5'- ----cGGcGCCUCGGacgugaGCUGGGACCCg -3'
miRNA:   3'- auuuuCC-CGGGGCCag----CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 227611 0.68 0.699544
Target:  5'- ----uGGGCgCCGGUCGgCCcuccaacacGGcGGCCCg -3'
miRNA:   3'- auuuuCCCGgGGCCAGC-GG---------CC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 227175 0.71 0.510544
Target:  5'- gGAGGGGGCCgcggaggccgcgCUGGcCGCCGuGGugCCc -3'
miRNA:   3'- aUUUUCCCGG------------GGCCaGCGGC-CCugGG- -5'
13936 3' -61.2 NC_003521.1 + 226925 0.67 0.736685
Target:  5'- -----cGGCCCCcuccgCGCCGGGcCCCc -3'
miRNA:   3'- auuuucCCGGGGcca--GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 226068 0.67 0.718243
Target:  5'- cGAAGGcGcGCCCCGGcCGCgGccGGCCCg -3'
miRNA:   3'- aUUUUC-C-CGGGGCCaGCGgCc-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 225959 0.77 0.228085
Target:  5'- --cGAGGGCgCCUGGgagCGCCuGGACCCc -3'
miRNA:   3'- auuUUCCCG-GGGCCa--GCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 224297 0.67 0.736685
Target:  5'- -cAGGGGcgacggcgcccGCCCCGacCGCCGGG-CCCg -3'
miRNA:   3'- auUUUCC-----------CGGGGCcaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 224040 0.67 0.74579
Target:  5'- ----cGGGCgCC-GUCGCCccuGGGACUCu -3'
miRNA:   3'- auuuuCCCGgGGcCAGCGG---CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 223661 0.66 0.822918
Target:  5'- --cGGGGcGCCacaCGGcccgCGUCGGGGCgCCg -3'
miRNA:   3'- auuUUCC-CGGg--GCCa---GCGGCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 218484 0.71 0.519679
Target:  5'- ---cAGuGGCCCCGGaCGUCGGGAaaggcgaaCCa -3'
miRNA:   3'- auuuUC-CCGGGGCCaGCGGCCCUg-------GG- -5'
13936 3' -61.2 NC_003521.1 + 216380 0.68 0.699544
Target:  5'- aGAAGGGcuGCCUCGGgCGUccaCGGGACuCCg -3'
miRNA:   3'- aUUUUCC--CGGGGCCaGCG---GCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 215639 0.67 0.763731
Target:  5'- gGAcGGGGCUCCgcauGGUCGCggCGGGAgCa -3'
miRNA:   3'- aUUuUCCCGGGG----CCAGCG--GCCCUgGg -5'
13936 3' -61.2 NC_003521.1 + 215396 0.66 0.798326
Target:  5'- aGGAAGGGCaCCaggaaGGUgagGCUGGGcgaGCCCu -3'
miRNA:   3'- aUUUUCCCG-GGg----CCAg--CGGCCC---UGGG- -5'
13936 3' -61.2 NC_003521.1 + 210927 0.67 0.754807
Target:  5'- ----cGGGUCgUCGGUCGUCGucGCCCa -3'
miRNA:   3'- auuuuCCCGG-GGCCAGCGGCccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 206591 0.68 0.698604
Target:  5'- -----aGGCCCCGGcuaUCGCgacauguCGGcGACCCa -3'
miRNA:   3'- auuuucCCGGGGCC---AGCG-------GCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 204393 0.71 0.492479
Target:  5'- ----cGGGCUCCGG-CGCCuGG-CCCg -3'
miRNA:   3'- auuuuCCCGGGGCCaGCGGcCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 204133 0.68 0.699544
Target:  5'- ----cGGGCCa-GG-CGCCGGaGCCCg -3'
miRNA:   3'- auuuuCCCGGggCCaGCGGCCcUGGG- -5'
13936 3' -61.2 NC_003521.1 + 203689 0.69 0.646317
Target:  5'- --cGGGGGCgCCCGGgccuugugcgacggCcugggaggcgugGCCGGGACCUg -3'
miRNA:   3'- auuUUCCCG-GGGCCa-------------G------------CGGCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.