miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 3666 0.7 0.575675
Target:  5'- ------uGCCUCGG-CgGCCGGGACCCu -3'
miRNA:   3'- auuuuccCGGGGCCaG-CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 3928 0.71 0.501475
Target:  5'- --cGAGGGUCCCGGcCGCCGaGGCa- -3'
miRNA:   3'- auuUUCCCGGGGCCaGCGGCcCUGgg -5'
13936 3' -61.2 NC_003521.1 + 4547 0.66 0.777792
Target:  5'- ---cAGGGuCCCCGGggagucacuacgGCCGGGGCa- -3'
miRNA:   3'- auuuUCCC-GGGGCCag----------CGGCCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 4833 0.66 0.796642
Target:  5'- -cGGAGGccggcguguGCCCCGGcCGUagugacuccccgGGGACCCu -3'
miRNA:   3'- auUUUCC---------CGGGGCCaGCGg-----------CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 4945 0.68 0.671142
Target:  5'- cGGGGGGGaCCgCGcgacGUCGCCggcGGGACCUa -3'
miRNA:   3'- aUUUUCCC-GGgGC----CAGCGG---CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 5832 0.81 0.129432
Target:  5'- ----cGGGUCCCGG-CGaCCGGGGCCCu -3'
miRNA:   3'- auuuuCCCGGGGCCaGC-GGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 6099 1.1 0.001456
Target:  5'- aUAAAAGGGCCCCGGUCGCCGGGACCCg -3'
miRNA:   3'- -AUUUUCCCGGGGCCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 6365 0.7 0.58516
Target:  5'- cAGAGGGGCCggucggGGUCGCggaGGGGCgCCg -3'
miRNA:   3'- aUUUUCCCGGgg----CCAGCGg--CCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 19605 0.66 0.781262
Target:  5'- --cGAGGGCUCC--UCGCCGGaGCUCc -3'
miRNA:   3'- auuUUCCCGGGGccAGCGGCCcUGGG- -5'
13936 3' -61.2 NC_003521.1 + 22599 0.66 0.776049
Target:  5'- -----cGGCCCCugcGGUCGCCugaccuccguugcccGGGACaCCc -3'
miRNA:   3'- auuuucCCGGGG---CCAGCGG---------------CCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 27276 0.66 0.806664
Target:  5'- ----uGGaGCCUCGGUuucgaUGCCGuGGCCCg -3'
miRNA:   3'- auuuuCC-CGGGGCCA-----GCGGCcCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 29421 0.66 0.784714
Target:  5'- ----cGGGCCCCGGUgacagcuacaaccaGCgCGuGGGCCa -3'
miRNA:   3'- auuuuCCCGGGGCCAg-------------CG-GC-CCUGGg -5'
13936 3' -61.2 NC_003521.1 + 29703 0.67 0.733937
Target:  5'- aUGAAcuGGCCCaCGcgcugguuguagcuGUCaCCGGGGCCCg -3'
miRNA:   3'- -AUUUucCCGGG-GC--------------CAGcGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 33932 0.71 0.519679
Target:  5'- ----cGGGCCacggCCGGUCGCUGGauCCCg -3'
miRNA:   3'- auuuuCCCGG----GGCCAGCGGCCcuGGG- -5'
13936 3' -61.2 NC_003521.1 + 34545 0.66 0.772551
Target:  5'- -----cGGCCCUGGgCGaaaucgaGGGACCCg -3'
miRNA:   3'- auuuucCCGGGGCCaGCgg-----CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 34982 0.67 0.754807
Target:  5'- ----cGGGCgCagaaGGUCuCCGGGGCCa -3'
miRNA:   3'- auuuuCCCGgGg---CCAGcGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 35159 0.68 0.661609
Target:  5'- --cGAGGGCgCCUGcGucUCGCUGGGcugGCCCu -3'
miRNA:   3'- auuUUCCCG-GGGC-C--AGCGGCCC---UGGG- -5'
13936 3' -61.2 NC_003521.1 + 36292 0.77 0.255368
Target:  5'- gAAGAGGGCCaagaCGGUCG-UGGGGCCg -3'
miRNA:   3'- aUUUUCCCGGg---GCCAGCgGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 39709 0.68 0.661609
Target:  5'- -----cGGCCCuCGG-CGCCGGG-CUCg -3'
miRNA:   3'- auuuucCCGGG-GCCaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 39774 0.66 0.798326
Target:  5'- --cAGGGGCUcguaguccagguCCaGUCGCUgcuagcuuucguGGGACCCg -3'
miRNA:   3'- auuUUCCCGG------------GGcCAGCGG------------CCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.