miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 197380 0.67 0.7275
Target:  5'- -uGGAGaGGCUCUGGcUCGCCgcccGGGACUg -3'
miRNA:   3'- auUUUC-CCGGGGCC-AGCGG----CCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 226068 0.67 0.718243
Target:  5'- cGAAGGcGcGCCCCGGcCGCgGccGGCCCg -3'
miRNA:   3'- aUUUUC-C-CGGGGCCaGCGgCc-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 62965 0.67 0.718243
Target:  5'- ----uGGGCCUCGGgcagGgCGGGuCCCg -3'
miRNA:   3'- auuuuCCCGGGGCCag--CgGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 74158 0.68 0.712658
Target:  5'- ---cGGGGCCCaGGUgccgcuggccgacugCGCCGcGGcGCCCg -3'
miRNA:   3'- auuuUCCCGGGgCCA---------------GCGGC-CC-UGGG- -5'
13936 3' -61.2 NC_003521.1 + 77253 0.68 0.708923
Target:  5'- ---cGGGGUCCaCGGgguacucgcCGCCGGGcACCa -3'
miRNA:   3'- auuuUCCCGGG-GCCa--------GCGGCCC-UGGg -5'
13936 3' -61.2 NC_003521.1 + 216380 0.68 0.699544
Target:  5'- aGAAGGGcuGCCUCGGgCGUccaCGGGACuCCg -3'
miRNA:   3'- aUUUUCC--CGGGGCCaGCG---GCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 227611 0.68 0.699544
Target:  5'- ----uGGGCgCCGGUCGgCCcuccaacacGGcGGCCCg -3'
miRNA:   3'- auuuuCCCGgGGCCAGC-GG---------CC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 172985 0.68 0.699544
Target:  5'- ----cGGGCCgCCuucugGGUCG-CGGGGCUCa -3'
miRNA:   3'- auuuuCCCGG-GG-----CCAGCgGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 204133 0.68 0.699544
Target:  5'- ----cGGGCCa-GG-CGCCGGaGCCCg -3'
miRNA:   3'- auuuuCCCGGggCCaGCGGCCcUGGG- -5'
13936 3' -61.2 NC_003521.1 + 187528 0.68 0.698604
Target:  5'- ----cGGGCCgagaacuacgagaUCGuGUCGCCGGcACCCa -3'
miRNA:   3'- auuuuCCCGG-------------GGC-CAGCGGCCcUGGG- -5'
13936 3' -61.2 NC_003521.1 + 206591 0.68 0.698604
Target:  5'- -----aGGCCCCGGcuaUCGCgacauguCGGcGACCCa -3'
miRNA:   3'- auuuucCCGGGGCC---AGCG-------GCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 90412 0.68 0.690117
Target:  5'- gAAGGGGGCguaucaguaUCCGG--GCUGGGAUCCg -3'
miRNA:   3'- aUUUUCCCG---------GGGCCagCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 164791 0.68 0.690117
Target:  5'- ----cGGGCaCgGGUCGUCGGGGacgauCCCg -3'
miRNA:   3'- auuuuCCCGgGgCCAGCGGCCCU-----GGG- -5'
13936 3' -61.2 NC_003521.1 + 93997 0.68 0.684439
Target:  5'- aAGucGGGaaccucgcccUUCCGGagugacgcacauagcUCGCCGGGGCCCg -3'
miRNA:   3'- aUUuuCCC----------GGGGCC---------------AGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 4945 0.68 0.671142
Target:  5'- cGGGGGGGaCCgCGcgacGUCGCCggcGGGACCUa -3'
miRNA:   3'- aUUUUCCC-GGgGC----CAGCGG---CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 173033 0.68 0.671142
Target:  5'- ----cGGcGcCCCCGGUggcagccagaaUGCCGGGcCCCg -3'
miRNA:   3'- auuuuCC-C-GGGGCCA-----------GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 39709 0.68 0.661609
Target:  5'- -----cGGCCCuCGG-CGCCGGG-CUCg -3'
miRNA:   3'- auuuucCCGGG-GCCaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 145168 0.68 0.661609
Target:  5'- -----cGGCCaCCGGcaUGCCGuGGGCCCg -3'
miRNA:   3'- auuuucCCGG-GGCCa-GCGGC-CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 112452 0.68 0.661609
Target:  5'- --cAGGcGGCCCUGGUgggcgcgccCGgCGGGGCCa -3'
miRNA:   3'- auuUUC-CCGGGGCCA---------GCgGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 35159 0.68 0.661609
Target:  5'- --cGAGGGCgCCUGcGucUCGCUGGGcugGCCCu -3'
miRNA:   3'- auuUUCCCG-GGGC-C--AGCGGCCC---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.