miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 189951 0.66 0.772551
Target:  5'- ----cGGGCCgCCGaGcCGUuccucaGGGACCCg -3'
miRNA:   3'- auuuuCCCGG-GGC-CaGCGg-----CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 67451 0.66 0.772551
Target:  5'- uUGAGcAGGGUgUUGGUucgggcggcUGCgCGGGACCCa -3'
miRNA:   3'- -AUUU-UCCCGgGGCCA---------GCG-GCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 59883 0.66 0.772551
Target:  5'- ----cGaGCCgCGGUcgcCGCCGGGGCCg -3'
miRNA:   3'- auuuuCcCGGgGCCA---GCGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 34545 0.66 0.772551
Target:  5'- -----cGGCCCUGGgCGaaaucgaGGGACCCg -3'
miRNA:   3'- auuuucCCGGGGCCaGCgg-----CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 113745 0.66 0.772551
Target:  5'- ----uGGGCCgCCucUCGUCGGuGGCCCu -3'
miRNA:   3'- auuuuCCCGG-GGccAGCGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 62235 0.67 0.763731
Target:  5'- cAGGAGGGCgCCCGGcuggacgCGCgGcuggagaaGGACCUg -3'
miRNA:   3'- aUUUUCCCG-GGGCCa------GCGgC--------CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 215639 0.67 0.763731
Target:  5'- gGAcGGGGCUCCgcauGGUCGCggCGGGAgCa -3'
miRNA:   3'- aUUuUCCCGGGG----CCAGCG--GCCCUgGg -5'
13936 3' -61.2 NC_003521.1 + 116995 0.67 0.763731
Target:  5'- -uGAAGGGCgCCGacu-CCGGGACCg -3'
miRNA:   3'- auUUUCCCGgGGCcagcGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 138130 0.67 0.763731
Target:  5'- ---cAGGcGCUCgGG-CGUCGGGGCUCu -3'
miRNA:   3'- auuuUCC-CGGGgCCaGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 154559 0.67 0.754807
Target:  5'- -----cGGCCCCGGaCGCCGuGccGCCCc -3'
miRNA:   3'- auuuucCCGGGGCCaGCGGCcC--UGGG- -5'
13936 3' -61.2 NC_003521.1 + 210927 0.67 0.754807
Target:  5'- ----cGGGUCgUCGGUCGUCGucGCCCa -3'
miRNA:   3'- auuuuCCCGG-GGCCAGCGGCccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 86213 0.67 0.754807
Target:  5'- -cGAAGGGCggCGGcaCGCCGGcGGCCUu -3'
miRNA:   3'- auUUUCCCGggGCCa-GCGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 34982 0.67 0.754807
Target:  5'- ----cGGGCgCagaaGGUCuCCGGGGCCa -3'
miRNA:   3'- auuuuCCCGgGg---CCAGcGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 191777 0.67 0.754807
Target:  5'- --cGAGcGCCCCGGUCGCauucgacgucucUGGGAaugCCg -3'
miRNA:   3'- auuUUCcCGGGGCCAGCG------------GCCCUg--GG- -5'
13936 3' -61.2 NC_003521.1 + 224040 0.67 0.74579
Target:  5'- ----cGGGCgCC-GUCGCCccuGGGACUCu -3'
miRNA:   3'- auuuuCCCGgGGcCAGCGG---CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 63534 0.67 0.74579
Target:  5'- ------uGCaCCCGGUCGCCGaggaaGGACUCg -3'
miRNA:   3'- auuuuccCG-GGGCCAGCGGC-----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 125596 0.67 0.74579
Target:  5'- ----uGGGCCgCGuGUCGCUcuguggccGGACCCa -3'
miRNA:   3'- auuuuCCCGGgGC-CAGCGGc-------CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 224297 0.67 0.736685
Target:  5'- -cAGGGGcgacggcgcccGCCCCGacCGCCGGG-CCCg -3'
miRNA:   3'- auUUUCC-----------CGGGGCcaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 226925 0.67 0.736685
Target:  5'- -----cGGCCCCcuccgCGCCGGGcCCCc -3'
miRNA:   3'- auuuucCCGGGGcca--GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 29703 0.67 0.733937
Target:  5'- aUGAAcuGGCCCaCGcgcugguuguagcuGUCaCCGGGGCCCg -3'
miRNA:   3'- -AUUUucCCGGG-GC--------------CAGcGGCCCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.