miRNA display CGI


Results 81 - 100 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 235205 0.67 0.986106
Target:  5'- uGUGGUGCGACuGCGACGa--GUGGCa -3'
miRNA:   3'- -CACCAUGCUGcUGCUGUcgcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 164767 0.67 0.986106
Target:  5'- -aGGUgGCGGCGACaGCuGCGGaGGCGa -3'
miRNA:   3'- caCCA-UGCUGCUGcUGuCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 241024 0.67 0.985779
Target:  5'- -cGGUuuccGCGGCGGCGuGCGGCGGgccggccggucgGACGu -3'
miRNA:   3'- caCCA----UGCUGCUGC-UGUCGCUa-----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 475 0.67 0.985779
Target:  5'- -cGGUuuccGCGGCGGCGuGCGGCGGgccggccggucgGACGu -3'
miRNA:   3'- caCCA----UGCUGCUGC-UGUCGCUa-----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 200292 0.67 0.985779
Target:  5'- -cGGUuuccGCGGCGGCGuGCGGCGGgccggccggucgGACGu -3'
miRNA:   3'- caCCA----UGCUGCUGC-UGUCGCUa-----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 214440 0.68 0.984413
Target:  5'- -cGGUGCugcagaaguuGAUGACGGCGGCGcUGAa- -3'
miRNA:   3'- caCCAUG----------CUGCUGCUGUCGCuACUgc -5'
13937 5' -52.8 NC_003521.1 + 228739 0.68 0.984413
Target:  5'- aUGGUGCugGGCGugGugGGCGAgu-CGc -3'
miRNA:   3'- cACCAUG--CUGCugCugUCGCUacuGC- -5'
13937 5' -52.8 NC_003521.1 + 196118 0.68 0.984413
Target:  5'- ----aGCGA-GGCGACAGCGcUGACGc -3'
miRNA:   3'- caccaUGCUgCUGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 42698 0.68 0.984413
Target:  5'- uGUGGcggGCGGCGACucCGGCGuuugauuauaAUGACGc -3'
miRNA:   3'- -CACCa--UGCUGCUGcuGUCGC----------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 139787 0.68 0.984413
Target:  5'- -gGGUuuGGCGuCGcccuCGGCGGUGGCGa -3'
miRNA:   3'- caCCAugCUGCuGCu---GUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 209558 0.68 0.984413
Target:  5'- -cGGggUGGCGGCGACGGUGgcGGgGg -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCuaCUgC- -5'
13937 5' -52.8 NC_003521.1 + 99265 0.68 0.984413
Target:  5'- gGUGGUACcugaggauugaGACGuCGG-AGCGAUGGCu -3'
miRNA:   3'- -CACCAUG-----------CUGCuGCUgUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 118921 0.68 0.982567
Target:  5'- -cGGcGCcGCGGCGugGGCGgcGGCGu -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 142791 0.68 0.982567
Target:  5'- -cGGUGCcACcaACGGCGGUGGUGGCa -3'
miRNA:   3'- caCCAUGcUGc-UGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 190197 0.68 0.982567
Target:  5'- -cGGcccgcACGAUGAUGAUAaaucGCGGUGGCGg -3'
miRNA:   3'- caCCa----UGCUGCUGCUGU----CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 186807 0.68 0.982374
Target:  5'- -aGGcGCcACGGCGugGGCGAccagaucUGACGg -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCU-------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 74572 0.68 0.980562
Target:  5'- -aGGgcgGCGACGgaGCGGCGGCGc-GGCGu -3'
miRNA:   3'- caCCa--UGCUGC--UGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 52228 0.68 0.980562
Target:  5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3'
miRNA:   3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 157498 0.68 0.980562
Target:  5'- uUGGUcgGACcucGCGGCGGCGuAUGACGg -3'
miRNA:   3'- cACCAugCUGc--UGCUGUCGC-UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 145587 0.68 0.980562
Target:  5'- -cGGcACGACG-CGGCGGCcGUGGCc -3'
miRNA:   3'- caCCaUGCUGCuGCUGUCGcUACUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.