miRNA display CGI


Results 61 - 80 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 215050 0.67 0.990349
Target:  5'- -cGGUGaaGAgGACGGCGGCGAgcggGAgGg -3'
miRNA:   3'- caCCAUg-CUgCUGCUGUCGCUa---CUgC- -5'
13937 5' -52.8 NC_003521.1 + 102338 0.67 0.990349
Target:  5'- cGUGG-GCGcCGACGcCGG-GGUGGCGg -3'
miRNA:   3'- -CACCaUGCuGCUGCuGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 193898 0.67 0.990349
Target:  5'- --uGUACGACGugGucagguuuCAGCGcgGGCa -3'
miRNA:   3'- cacCAUGCUGCugCu-------GUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 166834 0.67 0.990349
Target:  5'- ----gGCGACGACGgugaggauacGCAgGCGGUGGCGc -3'
miRNA:   3'- caccaUGCUGCUGC----------UGU-CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 151439 0.67 0.989067
Target:  5'- cGUGcGUACcguGCGGCGACAG--GUGACGa -3'
miRNA:   3'- -CAC-CAUGc--UGCUGCUGUCgcUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 46638 0.67 0.989067
Target:  5'- -cGGUagACGGCGuCGGCGGCGG-GAUc -3'
miRNA:   3'- caCCA--UGCUGCuGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 191135 0.67 0.989067
Target:  5'- cUGGcagGCuGACGGCGACAGCGcc-GCGc -3'
miRNA:   3'- cACCa--UG-CUGCUGCUGUCGCuacUGC- -5'
13937 5' -52.8 NC_003521.1 + 156330 0.67 0.989067
Target:  5'- -cGG-GCG-CGGCGGCGGCGAcguuguUGGCa -3'
miRNA:   3'- caCCaUGCuGCUGCUGUCGCU------ACUGc -5'
13937 5' -52.8 NC_003521.1 + 117388 0.67 0.989067
Target:  5'- gGUGGaagaggagGCGGCGGCugaGCGGCGGaGGCGg -3'
miRNA:   3'- -CACCa-------UGCUGCUGc--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 150317 0.67 0.989067
Target:  5'- -aGGU-CGACGAUGaccacccgguGCAGCG-UGGCGu -3'
miRNA:   3'- caCCAuGCUGCUGC----------UGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 130401 0.67 0.989067
Target:  5'- -cGGUgGCGGCaGCGGCGGCGccgccGACGa -3'
miRNA:   3'- caCCA-UGCUGcUGCUGUCGCua---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 194691 0.67 0.988931
Target:  5'- -gGGUGCGugGgGCGcgcgggccaggaaGCGGCGAcgGGCGa -3'
miRNA:   3'- caCCAUGCugC-UGC-------------UGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 42489 0.67 0.987655
Target:  5'- -cGGUACGAuaucCGACGuuCAGCGucGACGc -3'
miRNA:   3'- caCCAUGCU----GCUGCu-GUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 38200 0.67 0.987655
Target:  5'- ----gGCGACGAUGuaGCGGaCGAUGGCGc -3'
miRNA:   3'- caccaUGCUGCUGC--UGUC-GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 191677 0.67 0.987655
Target:  5'- -aGGU-CGcCGAgGACGGCGA-GGCGu -3'
miRNA:   3'- caCCAuGCuGCUgCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 143117 0.67 0.987655
Target:  5'- -aGG-ACGACGAgucggccaccacCGACGGCGAgggagugGGCGu -3'
miRNA:   3'- caCCaUGCUGCU------------GCUGUCGCUa------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 98958 0.67 0.987655
Target:  5'- gGUGGUgGCGgcuaGCGACGGCGGCGccuuuaggaGGCGu -3'
miRNA:   3'- -CACCA-UGC----UGCUGCUGUCGCua-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 78135 0.67 0.987655
Target:  5'- gGUGGgcgcguuaGCGGCGGCGGCcGCGA--ACGa -3'
miRNA:   3'- -CACCa-------UGCUGCUGCUGuCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 59611 0.67 0.987655
Target:  5'- aGUGGcgGCGGCccCGGCGGCGAccGCGg -3'
miRNA:   3'- -CACCa-UGCUGcuGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 164767 0.67 0.986106
Target:  5'- -aGGUgGCGGCGACaGCuGCGGaGGCGa -3'
miRNA:   3'- caCCA-UGCUGCUGcUGuCGCUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.