miRNA display CGI


Results 61 - 80 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 72970 0.72 0.885047
Target:  5'- cGUGGaucgcCGAgGACGACAGCGccGugGg -3'
miRNA:   3'- -CACCau---GCUgCUGCUGUCGCuaCugC- -5'
13937 5' -52.8 NC_003521.1 + 73129 0.74 0.80739
Target:  5'- -aGGUgcugcACGGCGGgGGCAGCGgcGGCGg -3'
miRNA:   3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 74572 0.68 0.980562
Target:  5'- -aGGgcgGCGACGgaGCGGCGGCGc-GGCGu -3'
miRNA:   3'- caCCa--UGCUGC--UGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 74773 0.8 0.516662
Target:  5'- cGUGGcuggaguaugACGACGGCGGCAGCGGUaGCGg -3'
miRNA:   3'- -CACCa---------UGCUGCUGCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 75963 0.69 0.961458
Target:  5'- uGUGGUGCgGACGGgGGCuggaccGCGGUGcCGg -3'
miRNA:   3'- -CACCAUG-CUGCUgCUGu-----CGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 76048 0.67 0.992459
Target:  5'- -cGGaGCGGgccgccagacgcuUGAUGACGGCGAUGuGCGg -3'
miRNA:   3'- caCCaUGCU-------------GCUGCUGUCGCUAC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 76089 0.69 0.964774
Target:  5'- -aGGUugGACuGGCGguACAGCGA-GAUGu -3'
miRNA:   3'- caCCAugCUG-CUGC--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 76673 0.69 0.966665
Target:  5'- -cGGUAuguggcgaugaagcCGACGACGGguccgugUAGCGGUGGCa -3'
miRNA:   3'- caCCAU--------------GCUGCUGCU-------GUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 76867 0.7 0.94164
Target:  5'- gGUGGUaGCGGCGGCugGACGGUGGaGGCu -3'
miRNA:   3'- -CACCA-UGCUGCUG--CUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 77404 0.67 0.992559
Target:  5'- cUGGUA-GGCaGCGGCAGCcGAcGACGg -3'
miRNA:   3'- cACCAUgCUGcUGCUGUCG-CUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 77710 0.68 0.980562
Target:  5'- cGUGGcgGCGuuguUGGCGACGGCGGccucggugGGCGg -3'
miRNA:   3'- -CACCa-UGCu---GCUGCUGUCGCUa-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 77731 0.72 0.885047
Target:  5'- -cGGUagcaGCGGCGGCGGCAGUGucacgGGCa -3'
miRNA:   3'- caCCA----UGCUGCUGCUGUCGCua---CUGc -5'
13937 5' -52.8 NC_003521.1 + 78135 0.67 0.987655
Target:  5'- gGUGGgcgcguuaGCGGCGGCGGCcGCGA--ACGa -3'
miRNA:   3'- -CACCa-------UGCUGCUGCUGuCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 78860 0.72 0.89817
Target:  5'- gGUGGUA--GCGcCGACGGCGcUGGCGg -3'
miRNA:   3'- -CACCAUgcUGCuGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 79994 0.72 0.904399
Target:  5'- -cGGUACGAgUGuCGGCGGCGGUGGu- -3'
miRNA:   3'- caCCAUGCU-GCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 80277 0.72 0.889739
Target:  5'- uUGGUuCGAaGACGACGGCGcguccgacgugcugGUGACGg -3'
miRNA:   3'- cACCAuGCUgCUGCUGUCGC--------------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 80763 0.67 0.992559
Target:  5'- -cGGagcCGugGGCGGC-GCGGUGGCc -3'
miRNA:   3'- caCCau-GCugCUGCUGuCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 85834 0.75 0.771665
Target:  5'- gGUGGgggGCGGCGGCGGCGGCGccucaGGCc -3'
miRNA:   3'- -CACCa--UGCUGCUGCUGUCGCua---CUGc -5'
13937 5' -52.8 NC_003521.1 + 86979 0.68 0.978389
Target:  5'- -gGGUugucuACGAUGuaggaGGCGGCGGUGAUGa -3'
miRNA:   3'- caCCA-----UGCUGCug---CUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 87380 0.69 0.961457
Target:  5'- gGUGGaggACGA-GGCGGCGGaGGUGACGc -3'
miRNA:   3'- -CACCa--UGCUgCUGCUGUCgCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.