miRNA display CGI


Results 41 - 60 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 45669 0.7 0.954189
Target:  5'- -aGGUGgaggccacggcCGACGAagaGGCGGCcGAUGACGu -3'
miRNA:   3'- caCCAU-----------GCUGCUg--CUGUCG-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 46638 0.67 0.989067
Target:  5'- -cGGUagACGGCGuCGGCGGCGG-GAUc -3'
miRNA:   3'- caCCA--UGCUGCuGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 50551 0.77 0.665227
Target:  5'- -aGGUGCGGCGGCaGCAGCGGcgGACc -3'
miRNA:   3'- caCCAUGCUGCUGcUGUCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 52228 0.68 0.980562
Target:  5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3'
miRNA:   3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 52644 0.71 0.916183
Target:  5'- -aGGccGCGACGGCGGuCAG-GAUGACGc -3'
miRNA:   3'- caCCa-UGCUGCUGCU-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 53635 0.69 0.961458
Target:  5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3'
miRNA:   3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 54158 0.68 0.976042
Target:  5'- -cGGUgGCGGgGGCGGCGGCGA--ACGc -3'
miRNA:   3'- caCCA-UGCUgCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 54320 0.72 0.878162
Target:  5'- -cGGcauCGGCGgagGCGGCGGUGGUGGCGg -3'
miRNA:   3'- caCCau-GCUGC---UGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 54446 0.69 0.961458
Target:  5'- -nGGcaaguCGACGuCGcGCGGCGGUGGCGg -3'
miRNA:   3'- caCCau---GCUGCuGC-UGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 54469 0.79 0.575239
Target:  5'- -gGGcUACG-CGGCGGCGGUGGUGGCGg -3'
miRNA:   3'- caCC-AUGCuGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 55927 0.67 0.991511
Target:  5'- gGUGGggccCGACGACGAggUGGCGcaccuguggagcGUGACGc -3'
miRNA:   3'- -CACCau--GCUGCUGCU--GUCGC------------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 57295 0.68 0.980352
Target:  5'- -cGGUGCG-CGGCGACugguggauaAGCGAgggcccgUGGCGc -3'
miRNA:   3'- caCCAUGCuGCUGCUG---------UCGCU-------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 58224 0.69 0.973513
Target:  5'- -aGG-ACGAUGAUGAUAGCGA-GAuCGa -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCUaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 58711 0.66 0.993502
Target:  5'- cGUGGUGCG-CGGaaaguucgccCGGCAGCGcUG-CGg -3'
miRNA:   3'- -CACCAUGCuGCU----------GCUGUCGCuACuGC- -5'
13937 5' -52.8 NC_003521.1 + 59611 0.67 0.987655
Target:  5'- aGUGGcgGCGGCccCGGCGGCGAccGCGg -3'
miRNA:   3'- -CACCa-UGCUGcuGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 66367 0.66 0.996362
Target:  5'- cGUGGc-CGGCGGCGAgCAGCGAc---- -3'
miRNA:   3'- -CACCauGCUGCUGCU-GUCGCUacugc -5'
13937 5' -52.8 NC_003521.1 + 71645 0.75 0.753051
Target:  5'- -cGG-ACGACGGCGuCGGCGgcGGCGg -3'
miRNA:   3'- caCCaUGCUGCUGCuGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 72538 0.66 0.993501
Target:  5'- -cGGagGCGGCGGCGACGGUGucguCGu -3'
miRNA:   3'- caCCa-UGCUGCUGCUGUCGCuacuGC- -5'
13937 5' -52.8 NC_003521.1 + 72713 0.8 0.497653
Target:  5'- -aGGUagacgacagucGCGACGACGACGGCGAgGACu -3'
miRNA:   3'- caCCA-----------UGCUGCUGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 72836 0.69 0.961458
Target:  5'- -cGGuUGCGAUGGCGACGcugagaggucGCGA-GACGa -3'
miRNA:   3'- caCC-AUGCUGCUGCUGU----------CGCUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.