miRNA display CGI


Results 41 - 60 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 31002 0.78 0.615138
Target:  5'- aUGGgGCGACGACGGCgccGGCGAgGACGc -3'
miRNA:   3'- cACCaUGCUGCUGCUG---UCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 18731 0.78 0.595136
Target:  5'- cUGGcgGCGGCGAucgUGGCGGCGGUGGCGc -3'
miRNA:   3'- cACCa-UGCUGCU---GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 150556 0.8 0.526276
Target:  5'- gGUGGUGCGGguggUGGCGGCGGCGgcGGCGc -3'
miRNA:   3'- -CACCAUGCU----GCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 74773 0.8 0.516662
Target:  5'- cGUGGcuggaguaugACGACGGCGGCAGCGGUaGCGg -3'
miRNA:   3'- -CACCa---------UGCUGCUGCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 92018 0.8 0.497652
Target:  5'- -aGGcGCGGCGGCGGCGGCGGUGGg- -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 137252 0.75 0.780796
Target:  5'- -gGGgcCGACGGCGGCAGCGGgcagaGCGg -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCUac---UGC- -5'
13937 5' -52.8 NC_003521.1 + 73129 0.74 0.80739
Target:  5'- -aGGUgcugcACGGCGGgGGCAGCGgcGGCGg -3'
miRNA:   3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 216291 0.71 0.910404
Target:  5'- cGUGGagcggACGACGuuGGCGGgGGUGAUGu -3'
miRNA:   3'- -CACCa----UGCUGCugCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 167529 0.71 0.910404
Target:  5'- gGUGGUGacgacaGACGGCGAUAGaGcgGACGu -3'
miRNA:   3'- -CACCAUg-----CUGCUGCUGUCgCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 91867 0.72 0.904399
Target:  5'- -cGGaccAgGACGGCGGCGGCGGUG-CGa -3'
miRNA:   3'- caCCa--UgCUGCUGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 102766 0.72 0.898169
Target:  5'- -cGGUagaGCGGCaGCGGCugcGCGAUGACGc -3'
miRNA:   3'- caCCA---UGCUGcUGCUGu--CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 28246 0.72 0.898169
Target:  5'- -aGGaagaagACGGCGccgagaggaacaGCGGCGGCGAUGACa -3'
miRNA:   3'- caCCa-----UGCUGC------------UGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 18084 0.72 0.891718
Target:  5'- cUGGa--GACGACGGCcGCGggGACGg -3'
miRNA:   3'- cACCaugCUGCUGCUGuCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 116469 0.72 0.891718
Target:  5'- cGUGGUgggacacgugGCGGCGAUGAagAGCGuccGUGACGg -3'
miRNA:   3'- -CACCA----------UGCUGCUGCUg-UCGC---UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 80277 0.72 0.889739
Target:  5'- uUGGUuCGAaGACGACGGCGcguccgacgugcugGUGACGg -3'
miRNA:   3'- cACCAuGCUgCUGCUGUCGC--------------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 30843 0.72 0.885047
Target:  5'- -cGG-GCGccuuGCGACGGCAGCGGuUGGCGu -3'
miRNA:   3'- caCCaUGC----UGCUGCUGUCGCU-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 91913 0.72 0.878162
Target:  5'- -cGGauccAgGACGGCGGCGGCGAUG-CGg -3'
miRNA:   3'- caCCa---UgCUGCUGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 218710 0.73 0.856262
Target:  5'- -aGGagACGGCGGCGGCGGCG--GGCGa -3'
miRNA:   3'- caCCa-UGCUGCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 162778 0.74 0.80739
Target:  5'- cGUGGUggACuGCGugGACGGCGAaGGCa -3'
miRNA:   3'- -CACCA--UGcUGCugCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 146642 0.74 0.80739
Target:  5'- -aGGgccccgGCcACGACGACGGCGAggagGACGg -3'
miRNA:   3'- caCCa-----UGcUGCUGCUGUCGCUa---CUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.