miRNA display CGI


Results 41 - 60 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 116481 0.75 0.7898
Target:  5'- -aGG-ACGACGaaGCGGCGGCGAcGGCGa -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 105852 0.75 0.7898
Target:  5'- -cGGcUGCGcCGGCGGCGGCGAcGACa -3'
miRNA:   3'- caCC-AUGCuGCUGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 205288 0.74 0.798668
Target:  5'- -aGGccgacUACGGCGGCGugGGCGAgaaccUGGCGg -3'
miRNA:   3'- caCC-----AUGCUGCUGCugUCGCU-----ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 146642 0.74 0.80739
Target:  5'- -aGGgccccgGCcACGACGACGGCGAggagGACGg -3'
miRNA:   3'- caCCa-----UGcUGCUGCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 73129 0.74 0.80739
Target:  5'- -aGGUgcugcACGGCGGgGGCAGCGgcGGCGg -3'
miRNA:   3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 162778 0.74 0.80739
Target:  5'- cGUGGUggACuGCGugGACGGCGAaGGCa -3'
miRNA:   3'- -CACCA--UGcUGCugCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 123096 0.74 0.807391
Target:  5'- -cGGUcaggACGACGACGGUAGCGgcGGCGu -3'
miRNA:   3'- caCCA----UGCUGCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 130016 0.74 0.815961
Target:  5'- -cGGUagaggGCGGCGAaGACGGCGcgGACGc -3'
miRNA:   3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 180381 0.74 0.824371
Target:  5'- cUGG-ACGACGACGACGGCucccaGACGc -3'
miRNA:   3'- cACCaUGCUGCUGCUGUCGcua--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 127318 0.73 0.84068
Target:  5'- -aGGcGCGuCGACGACGGCGAcGGCc -3'
miRNA:   3'- caCCaUGCuGCUGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 5854 0.73 0.84068
Target:  5'- gGUGGUgaaggaauacACGGCcgguGAUGACAGCGAcgGACGg -3'
miRNA:   3'- -CACCA----------UGCUG----CUGCUGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 222817 0.73 0.848566
Target:  5'- aGUGGUACGugGugGGCA-UGAUGGg- -3'
miRNA:   3'- -CACCAUGCugCugCUGUcGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 218710 0.73 0.856262
Target:  5'- -aGGagACGGCGGCGGCGGCG--GGCGa -3'
miRNA:   3'- caCCa-UGCUGCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 155999 0.73 0.863764
Target:  5'- -cGGUACGGCGAaacucccccauCGGCGGCGGcagcGGCGg -3'
miRNA:   3'- caCCAUGCUGCU-----------GCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 4621 0.73 0.871066
Target:  5'- -cGGgccGCGAUGAgcgaaccgcCGGCGGCGGUGGCGc -3'
miRNA:   3'- caCCa--UGCUGCU---------GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 91913 0.72 0.878162
Target:  5'- -cGGauccAgGACGGCGGCGGCGAUG-CGg -3'
miRNA:   3'- caCCa---UgCUGCUGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 54320 0.72 0.878162
Target:  5'- -cGGcauCGGCGgagGCGGCGGUGGUGGCGg -3'
miRNA:   3'- caCCau-GCUGC---UGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 72970 0.72 0.885047
Target:  5'- cGUGGaucgcCGAgGACGACAGCGccGugGg -3'
miRNA:   3'- -CACCau---GCUgCUGCUGUCGCuaCugC- -5'
13937 5' -52.8 NC_003521.1 + 30843 0.72 0.885047
Target:  5'- -cGG-GCGccuuGCGACGGCAGCGGuUGGCGu -3'
miRNA:   3'- caCCaUGC----UGCUGCUGUCGCU-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 142771 0.72 0.885047
Target:  5'- aGUGGUgGCGGCGgccACGACGGUGGUuGCGc -3'
miRNA:   3'- -CACCA-UGCUGC---UGCUGUCGCUAcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.