miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 141361 0.77 0.655229
Target:  5'- -gGGUGCGGCGGCGGuCGGUGAcgcggugcccgaUGACGa -3'
miRNA:   3'- caCCAUGCUGCUGCU-GUCGCU------------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 50551 0.77 0.665227
Target:  5'- -aGGUGCGGCGGCaGCAGCGGcgGACc -3'
miRNA:   3'- caCCAUGCUGCUGcUGUCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 196725 0.77 0.675199
Target:  5'- -----cCGGCGGCGACGGUGGUGGCGg -3'
miRNA:   3'- caccauGCUGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 118360 0.76 0.695034
Target:  5'- cGUGGU-CGugGGCGACGGCgccgccGAUGGCu -3'
miRNA:   3'- -CACCAuGCugCUGCUGUCG------CUACUGc -5'
13937 5' -52.8 NC_003521.1 + 115369 0.76 0.704879
Target:  5'- -cGGUcACGACGGgGGCGGCGAcGGCGc -3'
miRNA:   3'- caCCA-UGCUGCUgCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 17364 0.76 0.714666
Target:  5'- -gGGUACGACGGCGGgucCGGUGGCGg -3'
miRNA:   3'- caCCAUGCUGCUGCUgucGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 100535 0.76 0.714666
Target:  5'- gGUGGcUGCuGCGGCGGCGGCGgcGACa -3'
miRNA:   3'- -CACC-AUGcUGCUGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 154388 0.76 0.714666
Target:  5'- -cGGgccgcgGCGGCGACGACgaGGCGGUGAuCGa -3'
miRNA:   3'- caCCa-----UGCUGCUGCUG--UCGCUACU-GC- -5'
13937 5' -52.8 NC_003521.1 + 131045 0.76 0.724385
Target:  5'- cUGG-GCGGCGGCGGCGggccucuggacGCGGUGGCGg -3'
miRNA:   3'- cACCaUGCUGCUGCUGU-----------CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 117930 0.76 0.724386
Target:  5'- gGUGGUGCugcugcugagguGGCGGCGGCGGCGGggGACc -3'
miRNA:   3'- -CACCAUG------------CUGCUGCUGUCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 99312 0.76 0.734028
Target:  5'- gGUGGUGCGACuucGCGccCAGgGAUGACGg -3'
miRNA:   3'- -CACCAUGCUGc--UGCu-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 151364 0.75 0.743587
Target:  5'- gGUGGaagACGugGgcACGGgGGCGGUGACGg -3'
miRNA:   3'- -CACCa--UGCugC--UGCUgUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 36395 0.75 0.753051
Target:  5'- -gGGU-CGACGAgGGCAGCGAggUGACc -3'
miRNA:   3'- caCCAuGCUGCUgCUGUCGCU--ACUGc -5'
13937 5' -52.8 NC_003521.1 + 71645 0.75 0.753051
Target:  5'- -cGG-ACGACGGCGuCGGCGgcGGCGg -3'
miRNA:   3'- caCCaUGCUGCUGCuGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 218684 0.75 0.771664
Target:  5'- -cGGUAaGAgGGCGGCGGCGAaGGCGg -3'
miRNA:   3'- caCCAUgCUgCUGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 134174 0.75 0.771664
Target:  5'- -aGGUgGCcAUGAUGACGGCGAUGAUGa -3'
miRNA:   3'- caCCA-UGcUGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 85834 0.75 0.771665
Target:  5'- gGUGGgggGCGGCGGCGGCGGCGccucaGGCc -3'
miRNA:   3'- -CACCa--UGCUGCUGCUGUCGCua---CUGc -5'
13937 5' -52.8 NC_003521.1 + 164675 0.75 0.779889
Target:  5'- cGUGGUGaaccccgUGACGACGAggcCGGCGGcUGACGa -3'
miRNA:   3'- -CACCAU-------GCUGCUGCU---GUCGCU-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 137252 0.75 0.780796
Target:  5'- -gGGgcCGACGGCGGCAGCGGgcagaGCGg -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCUac---UGC- -5'
13937 5' -52.8 NC_003521.1 + 116481 0.75 0.7898
Target:  5'- -aGG-ACGACGaaGCGGCGGCGAcGGCGa -3'
miRNA:   3'- caCCaUGCUGC--UGCUGUCGCUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.