miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 30843 0.72 0.885047
Target:  5'- -cGG-GCGccuuGCGACGGCAGCGGuUGGCGu -3'
miRNA:   3'- caCCaUGC----UGCUGCUGUCGCU-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 31002 0.78 0.615138
Target:  5'- aUGGgGCGACGACGGCgccGGCGAgGACGc -3'
miRNA:   3'- cACCaUGCUGCUGCUG---UCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 31071 0.71 0.929117
Target:  5'- aUGGUgagaaccggccaacaGCGACGACGGCGGCGGccgGuACa -3'
miRNA:   3'- cACCA---------------UGCUGCUGCUGUCGCUa--C-UGc -5'
13937 5' -52.8 NC_003521.1 + 32005 0.68 0.976042
Target:  5'- -cGGUcgaGGCGGCGGaGGCGGUGGCc -3'
miRNA:   3'- caCCAug-CUGCUGCUgUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 33153 0.69 0.973513
Target:  5'- -gGGcACGGCGGCagcaccGGCGGCGcgGGCGc -3'
miRNA:   3'- caCCaUGCUGCUG------CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 35998 0.83 0.359242
Target:  5'- uUGGUcaGCGACGGCGACGGaGGUGGCGg -3'
miRNA:   3'- cACCA--UGCUGCUGCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 36395 0.75 0.753051
Target:  5'- -gGGU-CGACGAgGGCAGCGAggUGACc -3'
miRNA:   3'- caCCAuGCUGCUgCUGUCGCU--ACUGc -5'
13937 5' -52.8 NC_003521.1 + 38200 0.67 0.987655
Target:  5'- ----gGCGACGAUGuaGCGGaCGAUGGCGc -3'
miRNA:   3'- caccaUGCUGCUGC--UGUC-GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 39192 0.71 0.932144
Target:  5'- ----cGCGACGACGACGGuCGggGACc -3'
miRNA:   3'- caccaUGCUGCUGCUGUC-GCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 40283 0.66 0.996362
Target:  5'- -aGGUugACGAaGACGAUGGguuCGAUGGCGu -3'
miRNA:   3'- caCCA--UGCUgCUGCUGUC---GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 41614 0.8 0.497653
Target:  5'- -aGGUGCGACGguggaugacGCGAUAGCGAUcGGCGg -3'
miRNA:   3'- caCCAUGCUGC---------UGCUGUCGCUA-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 41709 0.69 0.967885
Target:  5'- cGUGGUguagACGGCGGCGGgGGuCGAgaaGAUGa -3'
miRNA:   3'- -CACCA----UGCUGCUGCUgUC-GCUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 42478 0.75 0.7898
Target:  5'- uGUGGUGCGAUuGCGACAGcCGcUGGCc -3'
miRNA:   3'- -CACCAUGCUGcUGCUGUC-GCuACUGc -5'
13937 5' -52.8 NC_003521.1 + 42489 0.67 0.987655
Target:  5'- -cGGUACGAuaucCGACGuuCAGCGucGACGc -3'
miRNA:   3'- caCCAUGCU----GCUGCu-GUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 42698 0.68 0.984413
Target:  5'- uGUGGcggGCGGCGACucCGGCGuuugauuauaAUGACGc -3'
miRNA:   3'- -CACCa--UGCUGCUGcuGUCGC----------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 42881 0.66 0.995099
Target:  5'- ----cAUGGCGGCGACGGCGccgccGGCGg -3'
miRNA:   3'- caccaUGCUGCUGCUGUCGCua---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 43527 0.66 0.995099
Target:  5'- -aGGUAgUGACGcAgGAUGGCGAUGAgGc -3'
miRNA:   3'- caCCAU-GCUGC-UgCUGUCGCUACUgC- -5'
13937 5' -52.8 NC_003521.1 + 43597 0.67 0.992559
Target:  5'- -cGGcgACGAgGACGACGagcGCGAcGACa -3'
miRNA:   3'- caCCa-UGCUgCUGCUGU---CGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 43827 0.68 0.978162
Target:  5'- -cGGUgcuugacGCGGCGcCGGCGGCGggGAgCGg -3'
miRNA:   3'- caCCA-------UGCUGCuGCUGUCGCuaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 44899 0.7 0.946047
Target:  5'- -cGGaucucagACGGCG-CGGCGGCGAgGACGa -3'
miRNA:   3'- caCCa------UGCUGCuGCUGUCGCUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.