Results 21 - 40 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 157217 | 0.66 | 0.996362 |
Target: 5'- cGUGGUGCGuuuguccuugaGCGcGCGACaaauguacggGGUGAUGGCc -3' miRNA: 3'- -CACCAUGC-----------UGC-UGCUG----------UCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 201639 | 0.66 | 0.995769 |
Target: 5'- cGUGGcuccCGGgGACGGCAGCGGUu-CGu -3' miRNA: 3'- -CACCau--GCUgCUGCUGUCGCUAcuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 22834 | 0.66 | 0.993502 |
Target: 5'- -gGGUGCGACGcgucaggaacAUGACcGUGuUGACGg -3' miRNA: 3'- caCCAUGCUGC----------UGCUGuCGCuACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 117668 | 0.66 | 0.996362 |
Target: 5'- -gGGcACGGCacCGACGGCGGgauagGACGg -3' miRNA: 3'- caCCaUGCUGcuGCUGUCGCUa----CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 191830 | 0.66 | 0.996362 |
Target: 5'- -gGGUGUGAaaUGACGugGGCGcuUGACGu -3' miRNA: 3'- caCCAUGCU--GCUGCugUCGCu-ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 43527 | 0.66 | 0.995099 |
Target: 5'- -aGGUAgUGACGcAgGAUGGCGAUGAgGc -3' miRNA: 3'- caCCAU-GCUGC-UgCUGUCGCUACUgC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 124447 | 0.66 | 0.996362 |
Target: 5'- cGUGGUugGGCcGCGGCGGCac--GCGu -3' miRNA: 3'- -CACCAugCUGcUGCUGUCGcuacUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 233510 | 0.66 | 0.994346 |
Target: 5'- -gGGUACGGUGACGAguGaCGuagcAUGACGc -3' miRNA: 3'- caCCAUGCUGCUGCUguC-GC----UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 212882 | 0.66 | 0.996362 |
Target: 5'- cGUGG-ACG-CgGGCGACGGgGGUGuCGg -3' miRNA: 3'- -CACCaUGCuG-CUGCUGUCgCUACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 197233 | 0.66 | 0.993502 |
Target: 5'- gGUGGggaGACGAUaaaGACAGaGGUGAUGg -3' miRNA: 3'- -CACCaugCUGCUG---CUGUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 190260 | 0.66 | 0.994346 |
Target: 5'- gGUGGUgggaGCGGUGACGGCGGCuuuuugagaaGGUGgACGg -3' miRNA: 3'- -CACCA----UGCUGCUGCUGUCG----------CUAC-UGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 72538 | 0.66 | 0.993501 |
Target: 5'- -cGGagGCGGCGGCGACGGUGucguCGu -3' miRNA: 3'- caCCa-UGCUGCUGCUGUCGCuacuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 218034 | 0.66 | 0.996362 |
Target: 5'- uUGGgcgGCGGCGGCGuccGCAGguaGAUGAgGu -3' miRNA: 3'- cACCa--UGCUGCUGC---UGUCg--CUACUgC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 239676 | 0.66 | 0.995769 |
Target: 5'- cGUGGcuccCGGgGACGGCAGCGGUu-CGu -3' miRNA: 3'- -CACCau--GCUgCUGCUGUCGCUAcuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 167705 | 0.66 | 0.993501 |
Target: 5'- cGUGGaggaGGCGGCGguaGCAGCGGUaGugGu -3' miRNA: 3'- -CACCaug-CUGCUGC---UGUCGCUA-CugC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 129208 | 0.66 | 0.994346 |
Target: 5'- gGUGGUcuggcGCGugGugGGCAGUcc-GGCGc -3' miRNA: 3'- -CACCA-----UGCugCugCUGUCGcuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 143117 | 0.67 | 0.987655 |
Target: 5'- -aGG-ACGACGAgucggccaccacCGACGGCGAgggagugGGCGu -3' miRNA: 3'- caCCaUGCUGCU------------GCUGUCGCUa------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 103687 | 0.67 | 0.992559 |
Target: 5'- -aGGUGCuGAUGAaccaCGACGGUGAcGugGg -3' miRNA: 3'- caCCAUG-CUGCU----GCUGUCGCUaCugC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 43597 | 0.67 | 0.992559 |
Target: 5'- -cGGcgACGAgGACGACGagcGCGAcGACa -3' miRNA: 3'- caCCa-UGCUgCUGCUGU---CGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 98958 | 0.67 | 0.987655 |
Target: 5'- gGUGGUgGCGgcuaGCGACGGCGGCGccuuuaggaGGCGu -3' miRNA: 3'- -CACCA-UGC----UGCUGCUGUCGCua-------CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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