Results 21 - 40 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 30843 | 0.72 | 0.885047 |
Target: 5'- -cGG-GCGccuuGCGACGGCAGCGGuUGGCGu -3' miRNA: 3'- caCCaUGC----UGCUGCUGUCGCU-ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 91913 | 0.72 | 0.878162 |
Target: 5'- -cGGauccAgGACGGCGGCGGCGAUG-CGg -3' miRNA: 3'- caCCa---UgCUGCUGCUGUCGCUACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 196725 | 0.77 | 0.675199 |
Target: 5'- -----cCGGCGGCGACGGUGGUGGCGg -3' miRNA: 3'- caccauGCUGCUGCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 141361 | 0.77 | 0.655229 |
Target: 5'- -gGGUGCGGCGGCGGuCGGUGAcgcggugcccgaUGACGa -3' miRNA: 3'- caCCAUGCUGCUGCU-GUCGCU------------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116406 | 0.78 | 0.62516 |
Target: 5'- uUGGUugGGuaGCGGCGGCGAUGGCa -3' miRNA: 3'- cACCAugCUgcUGCUGUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 31002 | 0.78 | 0.615138 |
Target: 5'- aUGGgGCGACGACGGCgccGGCGAgGACGc -3' miRNA: 3'- cACCaUGCUGCUGCUG---UCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 18731 | 0.78 | 0.595136 |
Target: 5'- cUGGcgGCGGCGAucgUGGCGGCGGUGGCGc -3' miRNA: 3'- cACCa-UGCUGCU---GCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 150556 | 0.8 | 0.526276 |
Target: 5'- gGUGGUGCGGguggUGGCGGCGGCGgcGGCGc -3' miRNA: 3'- -CACCAUGCU----GCUGCUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 74773 | 0.8 | 0.516662 |
Target: 5'- cGUGGcuggaguaugACGACGGCGGCAGCGGUaGCGg -3' miRNA: 3'- -CACCa---------UGCUGCUGCUGUCGCUAcUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 92018 | 0.8 | 0.497652 |
Target: 5'- -aGGcGCGGCGGCGGCGGCGGUGGg- -3' miRNA: 3'- caCCaUGCUGCUGCUGUCGCUACUgc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 131045 | 0.76 | 0.724385 |
Target: 5'- cUGG-GCGGCGGCGGCGggccucuggacGCGGUGGCGg -3' miRNA: 3'- cACCaUGCUGCUGCUGU-----------CGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 99312 | 0.76 | 0.734028 |
Target: 5'- gGUGGUGCGACuucGCGccCAGgGAUGACGg -3' miRNA: 3'- -CACCAUGCUGc--UGCu-GUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 218710 | 0.73 | 0.856262 |
Target: 5'- -aGGagACGGCGGCGGCGGCG--GGCGa -3' miRNA: 3'- caCCa-UGCUGCUGCUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 162778 | 0.74 | 0.80739 |
Target: 5'- cGUGGUggACuGCGugGACGGCGAaGGCa -3' miRNA: 3'- -CACCA--UGcUGCugCUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 146642 | 0.74 | 0.80739 |
Target: 5'- -aGGgccccgGCcACGACGACGGCGAggagGACGg -3' miRNA: 3'- caCCa-----UGcUGCUGCUGUCGCUa---CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 73129 | 0.74 | 0.80739 |
Target: 5'- -aGGUgcugcACGGCGGgGGCAGCGgcGGCGg -3' miRNA: 3'- caCCA-----UGCUGCUgCUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 137252 | 0.75 | 0.780796 |
Target: 5'- -gGGgcCGACGGCGGCAGCGGgcagaGCGg -3' miRNA: 3'- caCCauGCUGCUGCUGUCGCUac---UGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 164675 | 0.75 | 0.779889 |
Target: 5'- cGUGGUGaaccccgUGACGACGAggcCGGCGGcUGACGa -3' miRNA: 3'- -CACCAU-------GCUGCUGCU---GUCGCU-ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 218684 | 0.75 | 0.771664 |
Target: 5'- -cGGUAaGAgGGCGGCGGCGAaGGCGg -3' miRNA: 3'- caCCAUgCUgCUGCUGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 134174 | 0.75 | 0.771664 |
Target: 5'- -aGGUgGCcAUGAUGACGGCGAUGAUGa -3' miRNA: 3'- caCCA-UGcUGCUGCUGUCGCUACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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