miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 36395 0.75 0.753051
Target:  5'- -gGGU-CGACGAgGGCAGCGAggUGACc -3'
miRNA:   3'- caCCAuGCUGCUgCUGUCGCU--ACUGc -5'
13937 5' -52.8 NC_003521.1 + 117930 0.76 0.724386
Target:  5'- gGUGGUGCugcugcugagguGGCGGCGGCGGCGGggGACc -3'
miRNA:   3'- -CACCAUG------------CUGCUGCUGUCGCUa-CUGc -5'
13937 5' -52.8 NC_003521.1 + 224035 0.8 0.516662
Target:  5'- -cGGUaACGGCGcCGACAGCGAgGACGa -3'
miRNA:   3'- caCCA-UGCUGCuGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 30666 0.81 0.460624
Target:  5'- cGUGGU-CGGCGugGGCGGCGAcGGCa -3'
miRNA:   3'- -CACCAuGCUGCugCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 155999 0.73 0.863764
Target:  5'- -cGGUACGGCGAaacucccccauCGGCGGCGGcagcGGCGg -3'
miRNA:   3'- caCCAUGCUGCU-----------GCUGUCGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 205288 0.74 0.798668
Target:  5'- -aGGccgacUACGGCGGCGugGGCGAgaaccUGGCGg -3'
miRNA:   3'- caCC-----AUGCUGCUGCugUCGCU-----ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 17364 0.76 0.714666
Target:  5'- -gGGUACGACGGCGGgucCGGUGGCGg -3'
miRNA:   3'- caCCAUGCUGCUGCUgucGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 164874 0.81 0.442664
Target:  5'- gGUGGUAUGAgUGGCGGCGGCcGGUGGCGu -3'
miRNA:   3'- -CACCAUGCU-GCUGCUGUCG-CUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 42478 0.75 0.7898
Target:  5'- uGUGGUGCGAUuGCGACAGcCGcUGGCc -3'
miRNA:   3'- -CACCAUGCUGcUGCUGUC-GCuACUGc -5'
13937 5' -52.8 NC_003521.1 + 164734 0.83 0.383091
Target:  5'- -cGGcUGCGGCGGCGGCAGCGGcgaccgUGACGg -3'
miRNA:   3'- caCC-AUGCUGCUGCUGUCGCU------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 154388 0.76 0.714666
Target:  5'- -cGGgccgcgGCGGCGACGACgaGGCGGUGAuCGa -3'
miRNA:   3'- caCCa-----UGCUGCUGCUG--UCGCUACU-GC- -5'
13937 5' -52.8 NC_003521.1 + 85834 0.75 0.771665
Target:  5'- gGUGGgggGCGGCGGCGGCGGCGccucaGGCc -3'
miRNA:   3'- -CACCa--UGCUGCUGCUGUCGCua---CUGc -5'
13937 5' -52.8 NC_003521.1 + 118360 0.76 0.695034
Target:  5'- cGUGGU-CGugGGCGACGGCgccgccGAUGGCu -3'
miRNA:   3'- -CACCAuGCugCUGCUGUCG------CUACUGc -5'
13937 5' -52.8 NC_003521.1 + 54469 0.79 0.575239
Target:  5'- -gGGcUACG-CGGCGGCGGUGGUGGCGg -3'
miRNA:   3'- caCC-AUGCuGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 72713 0.8 0.497653
Target:  5'- -aGGUagacgacagucGCGACGACGACGGCGAgGACu -3'
miRNA:   3'- caCCA-----------UGCUGCUGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 211888 0.81 0.460624
Target:  5'- -cGGUACGACGGCGGuguCAGCGAaGACa -3'
miRNA:   3'- caCCAUGCUGCUGCU---GUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 72970 0.72 0.885047
Target:  5'- cGUGGaucgcCGAgGACGACAGCGccGugGg -3'
miRNA:   3'- -CACCau---GCUgCUGCUGUCGCuaCugC- -5'
13937 5' -52.8 NC_003521.1 + 4621 0.73 0.871066
Target:  5'- -cGGgccGCGAUGAgcgaaccgcCGGCGGCGGUGGCGc -3'
miRNA:   3'- caCCa--UGCUGCU---------GCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 5854 0.73 0.84068
Target:  5'- gGUGGUgaaggaauacACGGCcgguGAUGACAGCGAcgGACGg -3'
miRNA:   3'- -CACCA----------UGCUG----CUGCUGUCGCUa-CUGC- -5'
13937 5' -52.8 NC_003521.1 + 123096 0.74 0.807391
Target:  5'- -cGGUcaggACGACGACGGUAGCGgcGGCGu -3'
miRNA:   3'- caCCA----UGCUGCUGCUGUCGCuaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.