miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 214440 0.68 0.984413
Target:  5'- -cGGUGCugcagaaguuGAUGACGGCGGCGcUGAa- -3'
miRNA:   3'- caCCAUG----------CUGCUGCUGUCGCuACUgc -5'
13937 5' -52.8 NC_003521.1 + 214012 0.68 0.978389
Target:  5'- -cGGUgacACGACGGCGcuCAG-GGUGGCGu -3'
miRNA:   3'- caCCA---UGCUGCUGCu-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 212882 0.66 0.996362
Target:  5'- cGUGG-ACG-CgGGCGACGGgGGUGuCGg -3'
miRNA:   3'- -CACCaUGCuG-CUGCUGUCgCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 211888 0.81 0.460624
Target:  5'- -cGGUACGACGGCGGuguCAGCGAaGACa -3'
miRNA:   3'- caCCAUGCUGCUGCU---GUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 209558 0.68 0.984413
Target:  5'- -cGGggUGGCGGCGACGGUGgcGGgGg -3'
miRNA:   3'- caCCauGCUGCUGCUGUCGCuaCUgC- -5'
13937 5' -52.8 NC_003521.1 + 207425 0.71 0.93842
Target:  5'- aUGGUcgguagccagggagaGCGGCGGCuGGCGGCGugugugaGUGACGg -3'
miRNA:   3'- cACCA---------------UGCUGCUG-CUGUCGC-------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 206945 0.67 0.992559
Target:  5'- -aGGUA-GAUGcUGACGGCGAUGAg- -3'
miRNA:   3'- caCCAUgCUGCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 206439 0.69 0.972985
Target:  5'- cGUGGUGuagcgauUGACGugGGCGGgggauugccccauCGGUGGCGu -3'
miRNA:   3'- -CACCAU-------GCUGCugCUGUC-------------GCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 205288 0.74 0.798668
Target:  5'- -aGGccgacUACGGCGGCGugGGCGAgaaccUGGCGg -3'
miRNA:   3'- caCC-----AUGCUGCUGCugUCGCU-----ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 204324 0.69 0.973513
Target:  5'- uGUGGUGCGACu---GCGGCGAcUGGCa -3'
miRNA:   3'- -CACCAUGCUGcugcUGUCGCU-ACUGc -5'
13937 5' -52.8 NC_003521.1 + 204110 0.7 0.954189
Target:  5'- -gGGUGCucGGCGGCGACAuccGCGAcgagGGCGu -3'
miRNA:   3'- caCCAUG--CUGCUGCUGU---CGCUa---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 203718 0.7 0.954189
Target:  5'- cUGGU-CGGCGACugcgguguucgaGGCGGCGggGGCGc -3'
miRNA:   3'- cACCAuGCUGCUG------------CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 201639 0.66 0.995769
Target:  5'- cGUGGcuccCGGgGACGGCAGCGGUu-CGu -3'
miRNA:   3'- -CACCau--GCUgCUGCUGUCGCUAcuGC- -5'
13937 5' -52.8 NC_003521.1 + 201531 0.67 0.992559
Target:  5'- aUGGUuccGCuACGGCGcCGGCGAcgUGGCGc -3'
miRNA:   3'- cACCA---UGcUGCUGCuGUCGCU--ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 200415 0.69 0.967885
Target:  5'- -aGGgcaaACGAUGugGGCGGCGugcUGugGa -3'
miRNA:   3'- caCCa---UGCUGCugCUGUCGCu--ACugC- -5'
13937 5' -52.8 NC_003521.1 + 200292 0.67 0.985779
Target:  5'- -cGGUuuccGCGGCGGCGuGCGGCGGgccggccggucgGACGu -3'
miRNA:   3'- caCCA----UGCUGCUGC-UGUCGCUa-----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 197233 0.66 0.993502
Target:  5'- gGUGGggaGACGAUaaaGACAGaGGUGAUGg -3'
miRNA:   3'- -CACCaugCUGCUG---CUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 196725 0.77 0.675199
Target:  5'- -----cCGGCGGCGACGGUGGUGGCGg -3'
miRNA:   3'- caccauGCUGCUGCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 196118 0.68 0.984413
Target:  5'- ----aGCGA-GGCGACAGCGcUGACGc -3'
miRNA:   3'- caccaUGCUgCUGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 194691 0.67 0.988931
Target:  5'- -gGGUGCGugGgGCGcgcgggccaggaaGCGGCGAcgGGCGa -3'
miRNA:   3'- caCCAUGCugC-UGC-------------UGUCGCUa-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.