miRNA display CGI


Results 1 - 20 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 241024 0.67 0.985779
Target:  5'- -cGGUuuccGCGGCGGCGuGCGGCGGgccggccggucgGACGu -3'
miRNA:   3'- caCCA----UGCUGCUGC-UGUCGCUa-----------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 239785 0.67 0.992559
Target:  5'- aUGGUuccGCuACGGCGcCGGCGAcgUGGCGc -3'
miRNA:   3'- cACCA---UGcUGCUGCuGUCGCU--ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 239676 0.66 0.995769
Target:  5'- cGUGGcuccCGGgGACGGCAGCGGUu-CGu -3'
miRNA:   3'- -CACCau--GCUgCUGCUGUCGCUAcuGC- -5'
13937 5' -52.8 NC_003521.1 + 235205 0.67 0.986106
Target:  5'- uGUGGUGCGACuGCGACGa--GUGGCa -3'
miRNA:   3'- -CACCAUGCUGcUGCUGUcgcUACUGc -5'
13937 5' -52.8 NC_003521.1 + 234601 0.71 0.937006
Target:  5'- -aGGUcCGGCaGCGGaGGCGGUGACGg -3'
miRNA:   3'- caCCAuGCUGcUGCUgUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 233510 0.66 0.994346
Target:  5'- -gGGUACGGUGACGAguGaCGuagcAUGACGc -3'
miRNA:   3'- caCCAUGCUGCUGCUguC-GC----UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 233441 0.71 0.910405
Target:  5'- -cGGUAaCGGCGgccgccACGGCGGCGcgGACa -3'
miRNA:   3'- caCCAU-GCUGC------UGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 233359 0.7 0.94164
Target:  5'- gGUGGggaggGCGGCG-CGAgCGGCGGaGGCGg -3'
miRNA:   3'- -CACCa----UGCUGCuGCU-GUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 228739 0.68 0.984413
Target:  5'- aUGGUGCugGGCGugGugGGCGAgu-CGc -3'
miRNA:   3'- cACCAUG--CUGCugCugUCGCUacuGC- -5'
13937 5' -52.8 NC_003521.1 + 227407 0.68 0.978389
Target:  5'- -aGGgugGCGGCGACGACuuGCGAguGCu -3'
miRNA:   3'- caCCa--UGCUGCUGCUGu-CGCUacUGc -5'
13937 5' -52.8 NC_003521.1 + 225799 0.67 0.992459
Target:  5'- cUGGUgACGACGcguucgucgacgcGCGACGGCGccGAgCGg -3'
miRNA:   3'- cACCA-UGCUGC-------------UGCUGUCGCuaCU-GC- -5'
13937 5' -52.8 NC_003521.1 + 225245 0.66 0.994346
Target:  5'- cGUGGUGCugGugGGCGACcGCuacGAggaGACGg -3'
miRNA:   3'- -CACCAUG--CugCUGCUGuCG---CUa--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 224035 0.8 0.516662
Target:  5'- -cGGUaACGGCGcCGACAGCGAgGACGa -3'
miRNA:   3'- caCCA-UGCUGCuGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 222817 0.73 0.848566
Target:  5'- aGUGGUACGugGugGGCA-UGAUGGg- -3'
miRNA:   3'- -CACCAUGCugCugCUGUcGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 220928 0.69 0.970796
Target:  5'- --cGUGcCGA-GACGACGGCGAcGACGg -3'
miRNA:   3'- cacCAU-GCUgCUGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 218710 0.73 0.856262
Target:  5'- -aGGagACGGCGGCGGCGGCG--GGCGa -3'
miRNA:   3'- caCCa-UGCUGCUGCUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 218684 0.75 0.771664
Target:  5'- -cGGUAaGAgGGCGGCGGCGAaGGCGg -3'
miRNA:   3'- caCCAUgCUgCUGCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 218034 0.66 0.996362
Target:  5'- uUGGgcgGCGGCGGCGuccGCAGguaGAUGAgGu -3'
miRNA:   3'- cACCa--UGCUGCUGC---UGUCg--CUACUgC- -5'
13937 5' -52.8 NC_003521.1 + 216291 0.71 0.910404
Target:  5'- cGUGGagcggACGACGuuGGCGGgGGUGAUGu -3'
miRNA:   3'- -CACCa----UGCUGCugCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 215050 0.67 0.990349
Target:  5'- -cGGUGaaGAgGACGGCGGCGAgcggGAgGg -3'
miRNA:   3'- caCCAUg-CUgCUGCUGUCGCUa---CUgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.