Results 61 - 80 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 91913 | 0.72 | 0.878162 |
Target: 5'- -cGGauccAgGACGGCGGCGGCGAUG-CGg -3' miRNA: 3'- caCCa---UgCUGCUGCUGUCGCUACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 30843 | 0.72 | 0.885047 |
Target: 5'- -cGG-GCGccuuGCGACGGCAGCGGuUGGCGu -3' miRNA: 3'- caCCaUGC----UGCUGCUGUCGCU-ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 145862 | 0.71 | 0.921733 |
Target: 5'- cUGGgccCGGCGGCgGGCGGCGccGACGa -3' miRNA: 3'- cACCau-GCUGCUG-CUGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 31071 | 0.71 | 0.929117 |
Target: 5'- aUGGUgagaaccggccaacaGCGACGACGGCGGCGGccgGuACa -3' miRNA: 3'- cACCA---------------UGCUGCUGCUGUCGCUa--C-UGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 39192 | 0.71 | 0.932144 |
Target: 5'- ----cGCGACGACGACGGuCGggGACc -3' miRNA: 3'- caccaUGCUGCUGCUGUC-GCuaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 168540 | 0.71 | 0.932144 |
Target: 5'- -cGGccaGCG-CGGCGGCGGCGcUGGCGg -3' miRNA: 3'- caCCa--UGCuGCUGCUGUCGCuACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 207425 | 0.71 | 0.93842 |
Target: 5'- aUGGUcgguagccagggagaGCGGCGGCuGGCGGCGugugugaGUGACGg -3' miRNA: 3'- cACCA---------------UGCUGCUG-CUGUCGC-------UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 151256 | 0.7 | 0.94164 |
Target: 5'- cUGGgACGGCGACGACgaggAGCGc-GACGa -3' miRNA: 3'- cACCaUGCUGCUGCUG----UCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 44899 | 0.7 | 0.946047 |
Target: 5'- -cGGaucucagACGGCG-CGGCGGCGAgGACGa -3' miRNA: 3'- caCCa------UGCUGCuGCUGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 123269 | 0.7 | 0.94941 |
Target: 5'- cUGGUACagcgugaGCGACGACAGCGucagguccgcgGGCGa -3' miRNA: 3'- cACCAUGc------UGCUGCUGUCGCua---------CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116881 | 0.71 | 0.921733 |
Target: 5'- aGUGGcGCGGCuGCGGCGGCGcgccGGCGg -3' miRNA: 3'- -CACCaUGCUGcUGCUGUCGCua--CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 163905 | 0.71 | 0.916183 |
Target: 5'- -cGGUGCGuuacucggguGCGGCGGCAGCGGcaACGa -3' miRNA: 3'- caCCAUGC----------UGCUGCUGUCGCUacUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 80277 | 0.72 | 0.889739 |
Target: 5'- uUGGUuCGAaGACGACGGCGcguccgacgugcugGUGACGg -3' miRNA: 3'- cACCAuGCUgCUGCUGUCGC--------------UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 116469 | 0.72 | 0.891718 |
Target: 5'- cGUGGUgggacacgugGCGGCGAUGAagAGCGuccGUGACGg -3' miRNA: 3'- -CACCA----------UGCUGCUGCUg-UCGC---UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 18084 | 0.72 | 0.891718 |
Target: 5'- cUGGa--GACGACGGCcGCGggGACGg -3' miRNA: 3'- cACCaugCUGCUGCUGuCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 28246 | 0.72 | 0.898169 |
Target: 5'- -aGGaagaagACGGCGccgagaggaacaGCGGCGGCGAUGACa -3' miRNA: 3'- caCCa-----UGCUGC------------UGCUGUCGCUACUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 102766 | 0.72 | 0.898169 |
Target: 5'- -cGGUagaGCGGCaGCGGCugcGCGAUGACGc -3' miRNA: 3'- caCCA---UGCUGcUGCUGu--CGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 91867 | 0.72 | 0.904399 |
Target: 5'- -cGGaccAgGACGGCGGCGGCGGUG-CGa -3' miRNA: 3'- caCCa--UgCUGCUGCUGUCGCUACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 167529 | 0.71 | 0.910404 |
Target: 5'- gGUGGUGacgacaGACGGCGAUAGaGcgGACGu -3' miRNA: 3'- -CACCAUg-----CUGCUGCUGUCgCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 216291 | 0.71 | 0.910404 |
Target: 5'- cGUGGagcggACGACGuuGGCGGgGGUGAUGu -3' miRNA: 3'- -CACCa----UGCUGCugCUGUCgCUACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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