miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 78743 0.66 0.664586
Target:  5'- gCGaCUGCGGgcGUggGCGcGCaGCCCC-CCg -3'
miRNA:   3'- -GC-GGCGCCauCGa-CGC-CG-CGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 196975 0.66 0.683187
Target:  5'- uCGCCGcCGGUgaagucGGCcGUcGCuGCUCCUCCu -3'
miRNA:   3'- -GCGGC-GCCA------UCGaCGcCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 145579 0.66 0.683187
Target:  5'- uGCUGCGGcGGCacgacGCGGCGgCCguggCCUCg -3'
miRNA:   3'- gCGGCGCCaUCGa----CGCCGC-GG----GGAGg -5'
13938 5' -64.4 NC_003521.1 + 89010 0.66 0.683187
Target:  5'- uGCCGCGGgccccaccGGCgccacgGCGGUgaGUUCCUCg -3'
miRNA:   3'- gCGGCGCCa-------UCGa-----CGCCG--CGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 151556 0.66 0.664586
Target:  5'- gCGCgCGuCGGaacccaGGCUGCGG-GCCCaCUCg -3'
miRNA:   3'- -GCG-GC-GCCa-----UCGACGCCgCGGG-GAGg -5'
13938 5' -64.4 NC_003521.1 + 164883 0.66 0.664586
Target:  5'- gGUCGCGGUGGUgguaugagugGCGGCGgCCg--- -3'
miRNA:   3'- gCGGCGCCAUCGa---------CGCCGCgGGgagg -5'
13938 5' -64.4 NC_003521.1 + 225850 0.66 0.683187
Target:  5'- gCGCuCGUGGUGGUgcggGCacaGGUGCCggugCUCCa -3'
miRNA:   3'- -GCG-GCGCCAUCGa---CG---CCGCGGg---GAGG- -5'
13938 5' -64.4 NC_003521.1 + 141367 0.66 0.6739
Target:  5'- gGCgGCGGUcGGUgacGCGGUGCCCg--- -3'
miRNA:   3'- gCGgCGCCA-UCGa--CGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 24176 0.66 0.636535
Target:  5'- gGgCGCGGUGGCagcggagGCGGuCGaCCCCa-- -3'
miRNA:   3'- gCgGCGCCAUCGa------CGCC-GC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 165290 0.66 0.664586
Target:  5'- gGCCGCgauGGaAGCcGCGGCGaucgcggCCUCCu -3'
miRNA:   3'- gCGGCG---CCaUCGaCGCCGCgg-----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 154386 0.66 0.6739
Target:  5'- gGCCGCGGcGGCgacgacgagGCGGUGaucgacaUCUUCCc -3'
miRNA:   3'- gCGGCGCCaUCGa--------CGCCGCg------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 72949 0.66 0.683187
Target:  5'- gCGCCGUGGguggacggGGCggaauaGgGGCGCCgC-CCa -3'
miRNA:   3'- -GCGGCGCCa-------UCGa-----CgCCGCGGgGaGG- -5'
13938 5' -64.4 NC_003521.1 + 113199 0.66 0.680404
Target:  5'- gGUCGCGGUAgGCguaguaguugcccgUGaCGGgGCCCUcCCa -3'
miRNA:   3'- gCGGCGCCAU-CG--------------AC-GCCgCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 1240 0.66 0.664586
Target:  5'- uCGuuGuCGGUGGC-GCGGaaGCCCaUUCCu -3'
miRNA:   3'- -GCggC-GCCAUCGaCGCCg-CGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 197276 0.66 0.6739
Target:  5'- gGCCGCcucuGUcGCGGCGUCUCUCg -3'
miRNA:   3'- gCGGCGccauCGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 169219 0.66 0.683187
Target:  5'- aGCaGCGGgagcgacGGCgacaGCGGCGgCCCUgCCu -3'
miRNA:   3'- gCGgCGCCa------UCGa---CGCCGCgGGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 112000 0.66 0.680404
Target:  5'- uCGCCGUcuacgagccccaccGGgaaaacguuCUGCGGUGCCCCgaCCg -3'
miRNA:   3'- -GCGGCG--------------CCauc------GACGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 116873 0.66 0.683187
Target:  5'- gCGCgCGCaGUGGCgcggcugcgGCGGCGCgCCg-- -3'
miRNA:   3'- -GCG-GCGcCAUCGa--------CGCCGCGgGGagg -5'
13938 5' -64.4 NC_003521.1 + 138093 0.66 0.64028
Target:  5'- aGCCGCGGcgugAGCgccuuaauaaugcaGCuGCGCUCgUCCg -3'
miRNA:   3'- gCGGCGCCa---UCGa-------------CGcCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 233968 0.66 0.683187
Target:  5'- gGCCGCugaGGUGGagcugcaUGCGuuGUCCCUCg -3'
miRNA:   3'- gCGGCG---CCAUCg------ACGCcgCGGGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.