miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 53503 0.66 0.645896
Target:  5'- gGCCGCu---GCUGCGGCGUCgCagcggCCg -3'
miRNA:   3'- gCGGCGccauCGACGCCGCGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 197276 0.66 0.6739
Target:  5'- gGCCGCcucuGUcGCGGCGUCUCUCg -3'
miRNA:   3'- gCGGCGccauCGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 136714 0.66 0.645896
Target:  5'- aCGCCGCcgaGGaUGGCaGC-GCGCCgCCUuCCg -3'
miRNA:   3'- -GCGGCG---CC-AUCGaCGcCGCGG-GGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 42559 0.66 0.636535
Target:  5'- aCGCC-CGGcUGGCUGUccGGCGgCCgaguCUCCu -3'
miRNA:   3'- -GCGGcGCC-AUCGACG--CCGCgGG----GAGG- -5'
13938 5' -64.4 NC_003521.1 + 142934 0.66 0.645896
Target:  5'- uGCCGCcGUcgcuGCUGaCGGCGCUgCgCCg -3'
miRNA:   3'- gCGGCGcCAu---CGAC-GCCGCGGgGaGG- -5'
13938 5' -64.4 NC_003521.1 + 222325 0.66 0.636535
Target:  5'- aGCgUGUGGUGGCacacgGGCaGCUCCUCCa -3'
miRNA:   3'- gCG-GCGCCAUCGacg--CCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 53900 0.66 0.645896
Target:  5'- cCGCCGCccccGCcacCGGCGCCCC-CCu -3'
miRNA:   3'- -GCGGCGccauCGac-GCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 50548 0.66 0.645896
Target:  5'- uGCgGCGGcAGCaGCGGCGgaCCCggCUg -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCg-GGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 89010 0.66 0.683187
Target:  5'- uGCCGCGGgccccaccGGCgccacgGCGGUgaGUUCCUCg -3'
miRNA:   3'- gCGGCGCCa-------UCGa-----CGCCG--CGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 178975 0.66 0.655249
Target:  5'- aCGCgGCGGUGGauuucgGCGGUGaCCUauCUUCg -3'
miRNA:   3'- -GCGgCGCCAUCga----CGCCGC-GGG--GAGG- -5'
13938 5' -64.4 NC_003521.1 + 240307 0.66 0.645896
Target:  5'- gCGCCaucgGCGGaGGaccgccCGGCGCCCCgCCg -3'
miRNA:   3'- -GCGG----CGCCaUCgac---GCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 151079 0.66 0.664586
Target:  5'- gGCCGCGccGGCUGCcgucacCGCCCCcgugCCc -3'
miRNA:   3'- gCGGCGCcaUCGACGcc----GCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 190901 0.66 0.664586
Target:  5'- -cCCGgGGaAGCUGCcGC-CCCCUCUc -3'
miRNA:   3'- gcGGCgCCaUCGACGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 150898 0.66 0.664586
Target:  5'- aCGCCgGCGucaucGaCUGC-GCGCCCUUCCa -3'
miRNA:   3'- -GCGG-CGCcau--C-GACGcCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 192306 0.66 0.664586
Target:  5'- cCGuCCGCGGUAGCggcgucgGCGGCaCCgUggguaCCg -3'
miRNA:   3'- -GC-GGCGCCAUCGa------CGCCGcGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 142575 0.66 0.645896
Target:  5'- uCGCCGUGcccGCcGUGGcCGCCCCcgCCu -3'
miRNA:   3'- -GCGGCGCcauCGaCGCC-GCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 173669 0.66 0.636535
Target:  5'- gCGCCcccuccacggGUGGUGuuUGCGGagcCGCUCCUCCc -3'
miRNA:   3'- -GCGG----------CGCCAUcgACGCC---GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 87059 0.66 0.645896
Target:  5'- gGUCGCGGUAcguacGCgGUGGUGCCCa--- -3'
miRNA:   3'- gCGGCGCCAU-----CGaCGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 141152 0.66 0.664586
Target:  5'- gGCCGCGaGaAGaa-CGGCuGCCCCUUCc -3'
miRNA:   3'- gCGGCGC-CaUCgacGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 71264 0.66 0.663653
Target:  5'- cCGCCaacaucggcggagGCGGgGGCcGCGGCacggGCCCCUg- -3'
miRNA:   3'- -GCGG-------------CGCCaUCGaCGCCG----CGGGGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.