miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 228130 0.65 0.689666
Target:  5'- aGCCGuCGGUccuggaguagaaccGGUcGCGGCGCaCCaaCCa -3'
miRNA:   3'- gCGGC-GCCA--------------UCGaCGCCGCG-GGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 153496 0.65 0.691514
Target:  5'- uGCCGCGc-AGCUGCgccuccaGGCGCUCgCUgCg -3'
miRNA:   3'- gCGGCGCcaUCGACG-------CCGCGGG-GAgG- -5'
13938 5' -64.4 NC_003521.1 + 135619 0.65 0.691514
Target:  5'- cCGCCGCGGagacGGCgcgcGCGGgagggaggcaaccCGCCCgaCCc -3'
miRNA:   3'- -GCGGCGCCa---UCGa---CGCC-------------GCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 150898 0.66 0.664586
Target:  5'- aCGCCgGCGucaucGaCUGC-GCGCCCUUCCa -3'
miRNA:   3'- -GCGG-CGCcau--C-GACGcCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 70147 0.66 0.636535
Target:  5'- aGCUGCGGcgAGC-GCGGCuGCCUaucacgagUCCa -3'
miRNA:   3'- gCGGCGCCa-UCGaCGCCG-CGGGg-------AGG- -5'
13938 5' -64.4 NC_003521.1 + 222325 0.66 0.636535
Target:  5'- aGCgUGUGGUGGCacacgGGCaGCUCCUCCa -3'
miRNA:   3'- gCG-GCGCCAUCGacg--CCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 116713 0.66 0.654314
Target:  5'- gCGCCguccacuuccacgGCGGUcccGgaGuCGGCGCCCUUCa -3'
miRNA:   3'- -GCGG-------------CGCCAu--CgaC-GCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 141152 0.66 0.664586
Target:  5'- gGCCGCGaGaAGaa-CGGCuGCCCCUUCc -3'
miRNA:   3'- gCGGCGC-CaUCgacGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 190901 0.66 0.664586
Target:  5'- -cCCGgGGaAGCUGCcGC-CCCCUCUc -3'
miRNA:   3'- gcGGCgCCaUCGACGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 151079 0.66 0.664586
Target:  5'- gGCCGCGccGGCUGCcgucacCGCCCCcgugCCc -3'
miRNA:   3'- gCGGCGCcaUCGACGcc----GCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 233421 0.66 0.643088
Target:  5'- gGCCcCGGUGGCUccgacggccucgacGCGGU-CCCUUCUg -3'
miRNA:   3'- gCGGcGCCAUCGA--------------CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 142575 0.66 0.645896
Target:  5'- uCGCCGUGcccGCcGUGGcCGCCCCcgCCu -3'
miRNA:   3'- -GCGGCGCcauCGaCGCC-GCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 178975 0.66 0.655249
Target:  5'- aCGCgGCGGUGGauuucgGCGGUGaCCUauCUUCg -3'
miRNA:   3'- -GCGgCGCCAUCga----CGCCGC-GGG--GAGG- -5'
13938 5' -64.4 NC_003521.1 + 215444 0.66 0.655249
Target:  5'- aGCCGCGGg---UGCuGGCGCCaggCCg -3'
miRNA:   3'- gCGGCGCCaucgACG-CCGCGGggaGG- -5'
13938 5' -64.4 NC_003521.1 + 192306 0.66 0.664586
Target:  5'- cCGuCCGCGGUAGCggcgucgGCGGCaCCgUggguaCCg -3'
miRNA:   3'- -GC-GGCGCCAUCGa------CGCCGcGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 71264 0.66 0.663653
Target:  5'- cCGCCaacaucggcggagGCGGgGGCcGCGGCacggGCCCCUg- -3'
miRNA:   3'- -GCGG-------------CGCCaUCGaCGCCG----CGGGGAgg -5'
13938 5' -64.4 NC_003521.1 + 42559 0.66 0.636535
Target:  5'- aCGCC-CGGcUGGCUGUccGGCGgCCgaguCUCCu -3'
miRNA:   3'- -GCGGcGCC-AUCGACG--CCGCgGG----GAGG- -5'
13938 5' -64.4 NC_003521.1 + 85657 0.66 0.645896
Target:  5'- aGCCGCGGccgccAGCUGUuccgagccGGCGUCCagcacgcgCCg -3'
miRNA:   3'- gCGGCGCCa----UCGACG--------CCGCGGGga------GG- -5'
13938 5' -64.4 NC_003521.1 + 53503 0.66 0.645896
Target:  5'- gGCCGCu---GCUGCGGCGUCgCagcggCCg -3'
miRNA:   3'- gCGGCGccauCGACGCCGCGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 163771 0.66 0.655249
Target:  5'- gGCgGCGGcaacaacGGUaGCGGCGCCaCCaCCg -3'
miRNA:   3'- gCGgCGCCa------UCGaCGCCGCGG-GGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.