miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 1240 0.66 0.664586
Target:  5'- uCGuuGuCGGUGGC-GCGGaaGCCCaUUCCu -3'
miRNA:   3'- -GCggC-GCCAUCGaCGCCg-CGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 4598 0.68 0.571252
Target:  5'- gGCgGCGGUGGCgccaggcaugGaCGGUcgaGCCCCcgCCg -3'
miRNA:   3'- gCGgCGCCAUCGa---------C-GCCG---CGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 6653 1.11 0.00068
Target:  5'- cCGCCGCGGUAGCUGCGGCGCCCCUCCg -3'
miRNA:   3'- -GCGGCGCCAUCGACGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 17326 0.66 0.649639
Target:  5'- cCGCCaGCGGUAucgucggcGCUGCuGGUgcugccguugucgucGCUCCUCUu -3'
miRNA:   3'- -GCGG-CGCCAU--------CGACG-CCG---------------CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 17774 0.66 0.665518
Target:  5'- gCGCCGcCGGgccgGGaaccgccgugaccgGCGGCGCCgCUaCCg -3'
miRNA:   3'- -GCGGC-GCCa---UCga------------CGCCGCGGgGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 18758 0.73 0.306219
Target:  5'- gCGCCGaCGGgucGCUGCugcgacggcuGGUGCCCC-CCg -3'
miRNA:   3'- -GCGGC-GCCau-CGACG----------CCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 24176 0.66 0.636535
Target:  5'- gGgCGCGGUGGCagcggagGCGGuCGaCCCCa-- -3'
miRNA:   3'- gCgGCGCCAUCGa------CGCC-GC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 27957 0.7 0.439033
Target:  5'- -aCCGCGGUAGaaacgccagGCGGCGCUCacggCCa -3'
miRNA:   3'- gcGGCGCCAUCga-------CGCCGCGGGga--GG- -5'
13938 5' -64.4 NC_003521.1 + 28240 0.68 0.552845
Target:  5'- uGCCGCcGUGGCcGUGaGCGCCgCCUg- -3'
miRNA:   3'- gCGGCGcCAUCGaCGC-CGCGG-GGAgg -5'
13938 5' -64.4 NC_003521.1 + 30713 0.66 0.683187
Target:  5'- gCGCCGCGGgcucaUGUcGCGUgaCCUCCg -3'
miRNA:   3'- -GCGGCGCCaucg-ACGcCGCGg-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 31995 0.74 0.26356
Target:  5'- gGCggagGCGGUGGCcGCGGCGUCCCagCa -3'
miRNA:   3'- gCGg---CGCCAUCGaCGCCGCGGGGagG- -5'
13938 5' -64.4 NC_003521.1 + 32147 0.68 0.525586
Target:  5'- uGCCGCGGccUGGCggUGCGGUaCCgCUCg -3'
miRNA:   3'- gCGGCGCC--AUCG--ACGCCGcGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 32888 0.68 0.562028
Target:  5'- gCGCCGcCGGU-GCUGCcgccGUGCCCg-CCg -3'
miRNA:   3'- -GCGGC-GCCAuCGACGc---CGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 33930 0.68 0.561108
Target:  5'- gGCCacggcCGGUcGCUGgaucccgcucugcUGGcCGCCCCUCCa -3'
miRNA:   3'- gCGGc----GCCAuCGAC-------------GCC-GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 35028 0.68 0.51393
Target:  5'- gGCggaCGCGGUugGGCacgcucaugccgUGCGGCGCCaccacacaggucuuCCUCCg -3'
miRNA:   3'- gCG---GCGCCA--UCG------------ACGCCGCGG--------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 36061 0.69 0.464186
Target:  5'- cCGCCGCcgacacaacagGGcGGCgGCGGCGCCUCcaucaCCa -3'
miRNA:   3'- -GCGGCG-----------CCaUCGaCGCCGCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 36550 0.7 0.455717
Target:  5'- uGUCGCGGUccgAGgUGCGcaGCGCCUCgaUCCa -3'
miRNA:   3'- gCGGCGCCA---UCgACGC--CGCGGGG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 37416 0.68 0.562028
Target:  5'- gGCCugacCGuGUGGC-GCGGCGCCgagCCUCUg -3'
miRNA:   3'- gCGGc---GC-CAUCGaCGCCGCGG---GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 40753 0.66 0.663653
Target:  5'- gCGCUGCGGc-GCcGUGGCGCgCCgcggacacaucuaUCCg -3'
miRNA:   3'- -GCGGCGCCauCGaCGCCGCGgGG-------------AGG- -5'
13938 5' -64.4 NC_003521.1 + 40804 0.67 0.608458
Target:  5'- cCGgCGCGGUcAGCUauucgccucgggGCGGgGCCCgCgCCa -3'
miRNA:   3'- -GCgGCGCCA-UCGA------------CGCCgCGGG-GaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.