miRNA display CGI


Results 1 - 20 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 73140 0.72 0.33288
Target:  5'- gGCgGgGGcAGCggcgGCGGCGCCgCCUCg -3'
miRNA:   3'- gCGgCgCCaUCGa---CGCCGCGG-GGAGg -5'
13938 5' -64.4 NC_003521.1 + 150568 0.74 0.269346
Target:  5'- gGUgGCGGcGGCgGCGGCGCggcUCCUCCu -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 68421 0.73 0.281224
Target:  5'- -cCCGCGGcgacGGCUccGcCGGCGCCCCUCa -3'
miRNA:   3'- gcGGCGCCa---UCGA--C-GCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 187443 0.73 0.287317
Target:  5'- uCGCCGCGGccugcuccuGCU-CGGUcugucgGCCCCUCCg -3'
miRNA:   3'- -GCGGCGCCau-------CGAcGCCG------CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 79239 0.73 0.293514
Target:  5'- uGcCCGCGGUAGC-GCGGCGacacgUUCUCCg -3'
miRNA:   3'- gC-GGCGCCAUCGaCGCCGCg----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 195997 0.73 0.299814
Target:  5'- aGCCccaGG-AGCUGUGGCGUgucgCCCUCCg -3'
miRNA:   3'- gCGGcg-CCaUCGACGCCGCG----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 226363 0.73 0.299814
Target:  5'- gCGCCGCGGgAGCgGCGGCugacGCCgCCgcagggCCg -3'
miRNA:   3'- -GCGGCGCCaUCGaCGCCG----CGG-GGa-----GG- -5'
13938 5' -64.4 NC_003521.1 + 18758 0.73 0.306219
Target:  5'- gCGCCGaCGGgucGCUGCugcgacggcuGGUGCCCC-CCg -3'
miRNA:   3'- -GCGGC-GCCau-CGACG----------CCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 106359 0.72 0.328775
Target:  5'- gGCUGCGGUAGC-GgGGaaccgccaucuccgcCGCCuCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGaCgCC---------------GCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 83749 0.74 0.25563
Target:  5'- -aCCGCGGggGGCcugggacagggugGCGGCGCCCC-CCg -3'
miRNA:   3'- gcGGCGCCa-UCGa------------CGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 102349 0.74 0.246807
Target:  5'- aCGCCGgGGUGGCgGCaGGCGCUCUUg- -3'
miRNA:   3'- -GCGGCgCCAUCGaCG-CCGCGGGGAgg -5'
13938 5' -64.4 NC_003521.1 + 117236 0.75 0.215955
Target:  5'- gGCCGCGGcGGCUccCGGCGCCgCCgCCa -3'
miRNA:   3'- gCGGCGCCaUCGAc-GCCGCGG-GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 49575 0.82 0.074464
Target:  5'- uGCCGCGugGGCcGCGGCGCCgCCUCCu -3'
miRNA:   3'- gCGGCGCcaUCGaCGCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 118923 0.81 0.084134
Target:  5'- gCGCCGCGGcgugGGCgGCGGCGUCCCgucagggCCa -3'
miRNA:   3'- -GCGGCGCCa---UCGaCGCCGCGGGGa------GG- -5'
13938 5' -64.4 NC_003521.1 + 138069 0.8 0.104625
Target:  5'- cCGCCGCGGacAGCUGaGGCGCuggCCCUCCc -3'
miRNA:   3'- -GCGGCGCCa-UCGACgCCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 88065 0.8 0.107172
Target:  5'- gGUCGCGGUGGUcgGCGGCGCCCgUgaCCa -3'
miRNA:   3'- gCGGCGCCAUCGa-CGCCGCGGGgA--GG- -5'
13938 5' -64.4 NC_003521.1 + 46559 0.78 0.142609
Target:  5'- gCGCCgggugcugaaGCGGUGGUUGCGGUaGCCCUUCUu -3'
miRNA:   3'- -GCGG----------CGCCAUCGACGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 61848 0.77 0.164103
Target:  5'- gCGCCGCGGaa-CcGCGGCGCCUgUCCa -3'
miRNA:   3'- -GCGGCGCCaucGaCGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 190620 0.76 0.188466
Target:  5'- aGCCGCaGUAGCgucagGGUGUCCCUCCa -3'
miRNA:   3'- gCGGCGcCAUCGacg--CCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 218630 0.76 0.201804
Target:  5'- gCGCgGCGGUaagcggccacGGCcgGCGGCGCCUCgUCCc -3'
miRNA:   3'- -GCGgCGCCA----------UCGa-CGCCGCGGGG-AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.