miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 6653 1.11 0.00068
Target:  5'- cCGCCGCGGUAGCUGCGGCGCCCCUCCg -3'
miRNA:   3'- -GCGGCGCCAUCGACGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 137743 0.73 0.299814
Target:  5'- gCGCCGCGacacGC--CGGCGCCCUUCCa -3'
miRNA:   3'- -GCGGCGCcau-CGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 113125 0.72 0.319341
Target:  5'- aGCCGCGGgagcAGCUGgGGCaGCUCggCCa -3'
miRNA:   3'- gCGGCGCCa---UCGACgCCG-CGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 135619 0.65 0.691514
Target:  5'- cCGCCGCGGagacGGCgcgcGCGGgagggaggcaaccCGCCCgaCCc -3'
miRNA:   3'- -GCGGCGCCa---UCGa---CGCC-------------GCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 164546 0.77 0.164103
Target:  5'- uGCUGCGGUGGCUguccaggaGCGGCgguccGCgCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGA--------CGCCG-----CGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 224082 0.77 0.164103
Target:  5'- gCGcCCGCGGUGGCgGCGGCGCaggCCCgUCg -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGCG---GGG-AGg -5'
13938 5' -64.4 NC_003521.1 + 160757 0.75 0.225854
Target:  5'- cCGCCGCGGUcuGCUGUGuccgucuccuCGCCUCUCCu -3'
miRNA:   3'- -GCGGCGCCAu-CGACGCc---------GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 226897 0.74 0.236136
Target:  5'- gGCCGCgagcaagcuGGUGuGCUGCGGCgaGCCCCUgacgCCg -3'
miRNA:   3'- gCGGCG---------CCAU-CGACGCCG--CGGGGA----GG- -5'
13938 5' -64.4 NC_003521.1 + 222185 0.74 0.26356
Target:  5'- gCGCCGCGGcAGCcccgaaggGUGGCGCCgCgcgCCg -3'
miRNA:   3'- -GCGGCGCCaUCGa-------CGCCGCGGgGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 88770 0.73 0.299814
Target:  5'- gGCUGCGaGUcGCUGCGcGUGCCgCUCUa -3'
miRNA:   3'- gCGGCGC-CAuCGACGC-CGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141143 0.73 0.281224
Target:  5'- cCGCaCGCaGGggGGCgGCGGCGCCUCggCCg -3'
miRNA:   3'- -GCG-GCG-CCa-UCGaCGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 31995 0.74 0.26356
Target:  5'- gGCggagGCGGUGGCcGCGGCGUCCCagCa -3'
miRNA:   3'- gCGg---CGCCAUCGaCGCCGCGGGGagG- -5'
13938 5' -64.4 NC_003521.1 + 54431 0.86 0.03817
Target:  5'- gCGCgGCGGUGGCggagGCGGCgGCCUCUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGa---CGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 158245 0.73 0.287317
Target:  5'- uCGCCGCGG--GCgGCGGCGUCgCUaCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGCCGCGGgGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 149182 0.8 0.102134
Target:  5'- gCGCUGCGGUGcucgaugccGCgGCGGCGCUCCUCg -3'
miRNA:   3'- -GCGGCGCCAU---------CGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 129497 0.74 0.26356
Target:  5'- uGCCGCGcGUGGCcaGCGGCGCCggaCUgCCc -3'
miRNA:   3'- gCGGCGC-CAUCGa-CGCCGCGGg--GA-GG- -5'
13938 5' -64.4 NC_003521.1 + 74849 0.73 0.293514
Target:  5'- gGCCGCGGgacGCcGCGcCGCCgCUCCg -3'
miRNA:   3'- gCGGCGCCau-CGaCGCcGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 133770 0.72 0.317346
Target:  5'- uCGCCGCGGguugggccccgcAGCaGCGGCGCCaggugauCCUCg -3'
miRNA:   3'- -GCGGCGCCa-----------UCGaCGCCGCGG-------GGAGg -5'
13938 5' -64.4 NC_003521.1 + 62107 0.79 0.115168
Target:  5'- gCGCCGCGGUucc-GCGGCGCCCUcCCa -3'
miRNA:   3'- -GCGGCGCCAucgaCGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 130317 0.75 0.21547
Target:  5'- gGCCGCGG-AGacgUGCGuggccacGUGCCCCUCCa -3'
miRNA:   3'- gCGGCGCCaUCg--ACGC-------CGCGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.