miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 6653 1.11 0.00068
Target:  5'- cCGCCGCGGUAGCUGCGGCGCCCCUCCg -3'
miRNA:   3'- -GCGGCGCCAUCGACGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 54431 0.86 0.03817
Target:  5'- gCGCgGCGGUGGCggagGCGGCgGCCUCUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGa---CGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 112363 0.84 0.059683
Target:  5'- aCGCaCGCGGcGGCUGCGGCGUCUCgUCCa -3'
miRNA:   3'- -GCG-GCGCCaUCGACGCCGCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 49575 0.82 0.074464
Target:  5'- uGCCGCGugGGCcGCGGCGCCgCCUCCu -3'
miRNA:   3'- gCGGCGCcaUCGaCGCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 118923 0.81 0.084134
Target:  5'- gCGCCGCGGcgugGGCgGCGGCGUCCCgucagggCCa -3'
miRNA:   3'- -GCGGCGCCa---UCGaCGCCGCGGGGa------GG- -5'
13938 5' -64.4 NC_003521.1 + 149182 0.8 0.102134
Target:  5'- gCGCUGCGGUGcucgaugccGCgGCGGCGCUCCUCg -3'
miRNA:   3'- -GCGGCGCCAU---------CGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 138069 0.8 0.104625
Target:  5'- cCGCCGCGGacAGCUGaGGCGCuggCCCUCCc -3'
miRNA:   3'- -GCGGCGCCa-UCGACgCCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 88065 0.8 0.107172
Target:  5'- gGUCGCGGUGGUcgGCGGCGCCCgUgaCCa -3'
miRNA:   3'- gCGGCGCCAUCGa-CGCCGCGGGgA--GG- -5'
13938 5' -64.4 NC_003521.1 + 62107 0.79 0.115168
Target:  5'- gCGCCGCGGUucc-GCGGCGCCCUcCCa -3'
miRNA:   3'- -GCGGCGCCAucgaCGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 46559 0.78 0.142609
Target:  5'- gCGCCgggugcugaaGCGGUGGUUGCGGUaGCCCUUCUu -3'
miRNA:   3'- -GCGG----------CGCCAUCGACGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 61848 0.77 0.164103
Target:  5'- gCGCCGCGGaa-CcGCGGCGCCUgUCCa -3'
miRNA:   3'- -GCGGCGCCaucGaCGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 224082 0.77 0.164103
Target:  5'- gCGcCCGCGGUGGCgGCGGCGCaggCCCgUCg -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGCG---GGG-AGg -5'
13938 5' -64.4 NC_003521.1 + 164546 0.77 0.164103
Target:  5'- uGCUGCGGUGGCUguccaggaGCGGCgguccGCgCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGA--------CGCCG-----CGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 190620 0.76 0.188466
Target:  5'- aGCCGCaGUAGCgucagGGUGUCCCUCCa -3'
miRNA:   3'- gCGGCGcCAUCGacg--CCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 218630 0.76 0.201804
Target:  5'- gCGCgGCGGUaagcggccacGGCcgGCGGCGCCUCgUCCc -3'
miRNA:   3'- -GCGgCGCCA----------UCGa-CGCCGCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 130317 0.75 0.21547
Target:  5'- gGCCGCGG-AGacgUGCGuggccacGUGCCCCUCCa -3'
miRNA:   3'- gCGGCGCCaUCg--ACGC-------CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 117236 0.75 0.215955
Target:  5'- gGCCGCGGcGGCUccCGGCGCCgCCgCCa -3'
miRNA:   3'- gCGGCGCCaUCGAc-GCCGCGG-GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 160757 0.75 0.225854
Target:  5'- cCGCCGCGGUcuGCUGUGuccgucuccuCGCCUCUCCu -3'
miRNA:   3'- -GCGGCGCCAu-CGACGCc---------GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 226897 0.74 0.236136
Target:  5'- gGCCGCgagcaagcuGGUGuGCUGCGGCgaGCCCCUgacgCCg -3'
miRNA:   3'- gCGGCG---------CCAU-CGACGCCG--CGGGGA----GG- -5'
13938 5' -64.4 NC_003521.1 + 102349 0.74 0.246807
Target:  5'- aCGCCGgGGUGGCgGCaGGCGCUCUUg- -3'
miRNA:   3'- -GCGGCgCCAUCGaCG-CCGCGGGGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.