miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 83749 0.74 0.25563
Target:  5'- -aCCGCGGggGGCcugggacagggugGCGGCGCCCC-CCg -3'
miRNA:   3'- gcGGCGCCa-UCGa------------CGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 222185 0.74 0.26356
Target:  5'- gCGCCGCGGcAGCcccgaaggGUGGCGCCgCgcgCCg -3'
miRNA:   3'- -GCGGCGCCaUCGa-------CGCCGCGGgGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 31995 0.74 0.26356
Target:  5'- gGCggagGCGGUGGCcGCGGCGUCCCagCa -3'
miRNA:   3'- gCGg---CGCCAUCGaCGCCGCGGGGagG- -5'
13938 5' -64.4 NC_003521.1 + 129497 0.74 0.26356
Target:  5'- uGCCGCGcGUGGCcaGCGGCGCCggaCUgCCc -3'
miRNA:   3'- gCGGCGC-CAUCGa-CGCCGCGGg--GA-GG- -5'
13938 5' -64.4 NC_003521.1 + 56252 0.74 0.269346
Target:  5'- aCGCCGUGGaccGGCUGCGGC-CCCUgcaCa -3'
miRNA:   3'- -GCGGCGCCa--UCGACGCCGcGGGGag-G- -5'
13938 5' -64.4 NC_003521.1 + 150568 0.74 0.269346
Target:  5'- gGUgGCGGcGGCgGCGGCGCggcUCCUCCu -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141143 0.73 0.281224
Target:  5'- cCGCaCGCaGGggGGCgGCGGCGCCUCggCCg -3'
miRNA:   3'- -GCG-GCG-CCa-UCGaCGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 68421 0.73 0.281224
Target:  5'- -cCCGCGGcgacGGCUccGcCGGCGCCCCUCa -3'
miRNA:   3'- gcGGCGCCa---UCGA--C-GCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 158245 0.73 0.287317
Target:  5'- uCGCCGCGG--GCgGCGGCGUCgCUaCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGCCGCGGgGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 187443 0.73 0.287317
Target:  5'- uCGCCGCGGccugcuccuGCU-CGGUcugucgGCCCCUCCg -3'
miRNA:   3'- -GCGGCGCCau-------CGAcGCCG------CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 79239 0.73 0.293514
Target:  5'- uGcCCGCGGUAGC-GCGGCGacacgUUCUCCg -3'
miRNA:   3'- gC-GGCGCCAUCGaCGCCGCg----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 74849 0.73 0.293514
Target:  5'- gGCCGCGGgacGCcGCGcCGCCgCUCCg -3'
miRNA:   3'- gCGGCGCCau-CGaCGCcGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 88770 0.73 0.299814
Target:  5'- gGCUGCGaGUcGCUGCGcGUGCCgCUCUa -3'
miRNA:   3'- gCGGCGC-CAuCGACGC-CGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 195997 0.73 0.299814
Target:  5'- aGCCccaGG-AGCUGUGGCGUgucgCCCUCCg -3'
miRNA:   3'- gCGGcg-CCaUCGACGCCGCG----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 226363 0.73 0.299814
Target:  5'- gCGCCGCGGgAGCgGCGGCugacGCCgCCgcagggCCg -3'
miRNA:   3'- -GCGGCGCCaUCGaCGCCG----CGG-GGa-----GG- -5'
13938 5' -64.4 NC_003521.1 + 137743 0.73 0.299814
Target:  5'- gCGCCGCGacacGC--CGGCGCCCUUCCa -3'
miRNA:   3'- -GCGGCGCcau-CGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 18758 0.73 0.306219
Target:  5'- gCGCCGaCGGgucGCUGCugcgacggcuGGUGCCCC-CCg -3'
miRNA:   3'- -GCGGC-GCCau-CGACG----------CCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 133770 0.72 0.317346
Target:  5'- uCGCCGCGGguugggccccgcAGCaGCGGCGCCaggugauCCUCg -3'
miRNA:   3'- -GCGGCGCCa-----------UCGaCGCCGCGG-------GGAGg -5'
13938 5' -64.4 NC_003521.1 + 113125 0.72 0.319341
Target:  5'- aGCCGCGGgagcAGCUGgGGCaGCUCggCCa -3'
miRNA:   3'- gCGGCGCCa---UCGACgCCG-CGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 106359 0.72 0.328775
Target:  5'- gGCUGCGGUAGC-GgGGaaccgccaucuccgcCGCCuCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGaCgCC---------------GCGG-GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.