miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 156620 0.66 0.6739
Target:  5'- gCGCC-UGGU-GCUGCGcGaCGCCCUgggcuUCCu -3'
miRNA:   3'- -GCGGcGCCAuCGACGC-C-GCGGGG-----AGG- -5'
13938 5' -64.4 NC_003521.1 + 226331 0.66 0.6739
Target:  5'- gGCCGCGGcc---GgGGCGCgCCUUCg -3'
miRNA:   3'- gCGGCGCCaucgaCgCCGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 126276 0.66 0.6739
Target:  5'- gGUaCGUGGU-GCUGaugucGCGCUCCUCCu -3'
miRNA:   3'- gCG-GCGCCAuCGACgc---CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 197276 0.66 0.6739
Target:  5'- gGCCGCcucuGUcGCGGCGUCUCUCg -3'
miRNA:   3'- gCGGCGccauCGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 141367 0.66 0.6739
Target:  5'- gGCgGCGGUcGGUgacGCGGUGCCCg--- -3'
miRNA:   3'- gCGgCGCCA-UCGa--CGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 154386 0.66 0.6739
Target:  5'- gGCCGCGGcGGCgacgacgagGCGGUGaucgacaUCUUCCc -3'
miRNA:   3'- gCGGCGCCaUCGa--------CGCCGCg------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 17774 0.66 0.665518
Target:  5'- gCGCCGcCGGgccgGGaaccgccgugaccgGCGGCGCCgCUaCCg -3'
miRNA:   3'- -GCGGC-GCCa---UCga------------CGCCGCGGgGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 141152 0.66 0.664586
Target:  5'- gGCCGCGaGaAGaa-CGGCuGCCCCUUCc -3'
miRNA:   3'- gCGGCGC-CaUCgacGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 190901 0.66 0.664586
Target:  5'- -cCCGgGGaAGCUGCcGC-CCCCUCUc -3'
miRNA:   3'- gcGGCgCCaUCGACGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 151079 0.66 0.664586
Target:  5'- gGCCGCGccGGCUGCcgucacCGCCCCcgugCCc -3'
miRNA:   3'- gCGGCGCcaUCGACGcc----GCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 150898 0.66 0.664586
Target:  5'- aCGCCgGCGucaucGaCUGC-GCGCCCUUCCa -3'
miRNA:   3'- -GCGG-CGCcau--C-GACGcCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 78743 0.66 0.664586
Target:  5'- gCGaCUGCGGgcGUggGCGcGCaGCCCC-CCg -3'
miRNA:   3'- -GC-GGCGCCauCGa-CGC-CG-CGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 146149 0.66 0.664586
Target:  5'- cCGCCGcCGGcGGCcucgucGuCGGCGCCgCCcgCCg -3'
miRNA:   3'- -GCGGC-GCCaUCGa-----C-GCCGCGG-GGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 151556 0.66 0.664586
Target:  5'- gCGCgCGuCGGaacccaGGCUGCGG-GCCCaCUCg -3'
miRNA:   3'- -GCG-GC-GCCa-----UCGACGCCgCGGG-GAGg -5'
13938 5' -64.4 NC_003521.1 + 164883 0.66 0.664586
Target:  5'- gGUCGCGGUGGUgguaugagugGCGGCGgCCg--- -3'
miRNA:   3'- gCGGCGCCAUCGa---------CGCCGCgGGgagg -5'
13938 5' -64.4 NC_003521.1 + 165290 0.66 0.664586
Target:  5'- gGCCGCgauGGaAGCcGCGGCGaucgcggCCUCCu -3'
miRNA:   3'- gCGGCG---CCaUCGaCGCCGCgg-----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 1240 0.66 0.664586
Target:  5'- uCGuuGuCGGUGGC-GCGGaaGCCCaUUCCu -3'
miRNA:   3'- -GCggC-GCCAUCGaCGCCg-CGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 192306 0.66 0.664586
Target:  5'- cCGuCCGCGGUAGCggcgucgGCGGCaCCgUggguaCCg -3'
miRNA:   3'- -GC-GGCGCCAUCGa------CGCCGcGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 40753 0.66 0.663653
Target:  5'- gCGCUGCGGc-GCcGUGGCGCgCCgcggacacaucuaUCCg -3'
miRNA:   3'- -GCGGCGCCauCGaCGCCGCGgGG-------------AGG- -5'
13938 5' -64.4 NC_003521.1 + 71264 0.66 0.663653
Target:  5'- cCGCCaacaucggcggagGCGGgGGCcGCGGCacggGCCCCUg- -3'
miRNA:   3'- -GCGG-------------CGCCaUCGaCGCCG----CGGGGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.