miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 42290 0.66 0.655249
Target:  5'- aGCUGC-GUGGUgccgGCGGCGUCUgUCg -3'
miRNA:   3'- gCGGCGcCAUCGa---CGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 215444 0.66 0.655249
Target:  5'- aGCCGCGGg---UGCuGGCGCCaggCCg -3'
miRNA:   3'- gCGGCGCCaucgACG-CCGCGGggaGG- -5'
13938 5' -64.4 NC_003521.1 + 178975 0.66 0.655249
Target:  5'- aCGCgGCGGUGGauuucgGCGGUGaCCUauCUUCg -3'
miRNA:   3'- -GCGgCGCCAUCga----CGCCGC-GGG--GAGG- -5'
13938 5' -64.4 NC_003521.1 + 163771 0.66 0.655249
Target:  5'- gGCgGCGGcaacaacGGUaGCGGCGCCaCCaCCg -3'
miRNA:   3'- gCGgCGCCa------UCGaCGCCGCGG-GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 116713 0.66 0.654314
Target:  5'- gCGCCguccacuuccacgGCGGUcccGgaGuCGGCGCCCUUCa -3'
miRNA:   3'- -GCGG-------------CGCCAu--CgaC-GCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 17326 0.66 0.649639
Target:  5'- cCGCCaGCGGUAucgucggcGCUGCuGGUgcugccguugucgucGCUCCUCUu -3'
miRNA:   3'- -GCGG-CGCCAU--------CGACG-CCG---------------CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 87059 0.66 0.645896
Target:  5'- gGUCGCGGUAcguacGCgGUGGUGCCCa--- -3'
miRNA:   3'- gCGGCGCCAU-----CGaCGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 240307 0.66 0.645896
Target:  5'- gCGCCaucgGCGGaGGaccgccCGGCGCCCCgCCg -3'
miRNA:   3'- -GCGG----CGCCaUCgac---GCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 142934 0.66 0.645896
Target:  5'- uGCCGCcGUcgcuGCUGaCGGCGCUgCgCCg -3'
miRNA:   3'- gCGGCGcCAu---CGAC-GCCGCGGgGaGG- -5'
13938 5' -64.4 NC_003521.1 + 50548 0.66 0.645896
Target:  5'- uGCgGCGGcAGCaGCGGCGgaCCCggCUg -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCg-GGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 201008 0.66 0.645896
Target:  5'- gCGCCaucgGCGGaGGaccgccCGGCGCCCCgCCg -3'
miRNA:   3'- -GCGG----CGCCaUCgac---GCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 85657 0.66 0.645896
Target:  5'- aGCCGCGGccgccAGCUGUuccgagccGGCGUCCagcacgcgCCg -3'
miRNA:   3'- gCGGCGCCa----UCGACG--------CCGCGGGga------GG- -5'
13938 5' -64.4 NC_003521.1 + 53503 0.66 0.645896
Target:  5'- gGCCGCu---GCUGCGGCGUCgCagcggCCg -3'
miRNA:   3'- gCGGCGccauCGACGCCGCGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 136714 0.66 0.645896
Target:  5'- aCGCCGCcgaGGaUGGCaGC-GCGCCgCCUuCCg -3'
miRNA:   3'- -GCGGCG---CC-AUCGaCGcCGCGG-GGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 53900 0.66 0.645896
Target:  5'- cCGCCGCccccGCcacCGGCGCCCC-CCu -3'
miRNA:   3'- -GCGGCGccauCGac-GCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 142575 0.66 0.645896
Target:  5'- uCGCCGUGcccGCcGUGGcCGCCCCcgCCu -3'
miRNA:   3'- -GCGGCGCcauCGaCGCC-GCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 233421 0.66 0.643088
Target:  5'- gGCCcCGGUGGCUccgacggccucgacGCGGU-CCCUUCUg -3'
miRNA:   3'- gCGGcGCCAUCGA--------------CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 138093 0.66 0.64028
Target:  5'- aGCCGCGGcgugAGCgccuuaauaaugcaGCuGCGCUCgUCCg -3'
miRNA:   3'- gCGGCGCCa---UCGa-------------CGcCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 173669 0.66 0.636535
Target:  5'- gCGCCcccuccacggGUGGUGuuUGCGGagcCGCUCCUCCc -3'
miRNA:   3'- -GCGG----------CGCCAUcgACGCC---GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 24176 0.66 0.636535
Target:  5'- gGgCGCGGUGGCagcggagGCGGuCGaCCCCa-- -3'
miRNA:   3'- gCgGCGCCAUCGa------CGCC-GC-GGGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.