miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 222325 0.66 0.636535
Target:  5'- aGCgUGUGGUGGCacacgGGCaGCUCCUCCa -3'
miRNA:   3'- gCG-GCGCCAUCGacg--CCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 42559 0.66 0.636535
Target:  5'- aCGCC-CGGcUGGCUGUccGGCGgCCgaguCUCCu -3'
miRNA:   3'- -GCGGcGCC-AUCGACG--CCGCgGG----GAGG- -5'
13938 5' -64.4 NC_003521.1 + 70147 0.66 0.636535
Target:  5'- aGCUGCGGcgAGC-GCGGCuGCCUaucacgagUCCa -3'
miRNA:   3'- gCGGCGCCa-UCGaCGCCG-CGGGg-------AGG- -5'
13938 5' -64.4 NC_003521.1 + 197734 0.66 0.635599
Target:  5'- cCGCCGCGcGUgaacauccgccagAGCaUGCgcuGGCGCCgCCUggCCa -3'
miRNA:   3'- -GCGGCGC-CA-------------UCG-ACG---CCGCGG-GGA--GG- -5'
13938 5' -64.4 NC_003521.1 + 100529 0.67 0.627171
Target:  5'- uGCUGCGGcGGCgGCGGCgacaGCUCgUCg -3'
miRNA:   3'- gCGGCGCCaUCGaCGCCG----CGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 70700 0.67 0.627171
Target:  5'- gCGCCGCa--AGCUGCgucGGCGCCUgcgCCg -3'
miRNA:   3'- -GCGGCGccaUCGACG---CCGCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 63068 0.67 0.627171
Target:  5'- aCGaCCGCGaccccGUacAGCUGCgccGGCGCgcugcccgCCCUCCa -3'
miRNA:   3'- -GC-GGCGC-----CA--UCGACG---CCGCG--------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 197638 0.67 0.627171
Target:  5'- gGCCGCGaacguGUUGCGGCacGUCCCagucUCCu -3'
miRNA:   3'- gCGGCGCcau--CGACGCCG--CGGGG----AGG- -5'
13938 5' -64.4 NC_003521.1 + 127219 0.67 0.627171
Target:  5'- uCGUCGuCGcUGGC-GCGGUGgUCCUCCa -3'
miRNA:   3'- -GCGGC-GCcAUCGaCGCCGCgGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 129995 0.67 0.627171
Target:  5'- cCGCUGCGccGGCgGCGGCGCgCaacggCCg -3'
miRNA:   3'- -GCGGCGCcaUCGaCGCCGCGgGga---GG- -5'
13938 5' -64.4 NC_003521.1 + 211833 0.67 0.627171
Target:  5'- cCGCCGCG--AGCgUGCGGCGCUaCUg- -3'
miRNA:   3'- -GCGGCGCcaUCG-ACGCCGCGGgGAgg -5'
13938 5' -64.4 NC_003521.1 + 75548 0.67 0.626234
Target:  5'- aGCgGCGccGGCgGCGGCuacgccaGCgCCCUCCu -3'
miRNA:   3'- gCGgCGCcaUCGaCGCCG-------CG-GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 128132 0.67 0.618745
Target:  5'- aCGCCGCgcauccugguGGgcaaccugcccgacgGGCUGgcgcCGGgGCCCUUCCa -3'
miRNA:   3'- -GCGGCG----------CCa--------------UCGAC----GCCgCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 101301 0.67 0.617809
Target:  5'- gGCCGCcauGG-AGCUGCacgGGCGUgCCCgCCa -3'
miRNA:   3'- gCGGCG---CCaUCGACG---CCGCG-GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 115659 0.67 0.617809
Target:  5'- gGCCGUGGcGGCcGCccGCGCCCUgcacaugCCg -3'
miRNA:   3'- gCGGCGCCaUCGaCGc-CGCGGGGa------GG- -5'
13938 5' -64.4 NC_003521.1 + 70028 0.67 0.617809
Target:  5'- uCGCCGUGGUAuGCcgucagUGCGGCcauuGCCUCaaUCUg -3'
miRNA:   3'- -GCGGCGCCAU-CG------ACGCCG----CGGGG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 49113 0.67 0.617809
Target:  5'- uGCgCGUGGUGaCcGCGGCGCCgCUgCu -3'
miRNA:   3'- gCG-GCGCCAUcGaCGCCGCGGgGAgG- -5'
13938 5' -64.4 NC_003521.1 + 138317 0.67 0.617809
Target:  5'- cCGCgGCGGUcGCggGCGacccaCGCCCCgugcgCCg -3'
miRNA:   3'- -GCGgCGCCAuCGa-CGCc----GCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 146935 0.67 0.617809
Target:  5'- aGCUGCGGUcGGCUuCGuuGCCguCCUCCu -3'
miRNA:   3'- gCGGCGCCA-UCGAcGCcgCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 40804 0.67 0.608458
Target:  5'- cCGgCGCGGUcAGCUauucgccucgggGCGGgGCCCgCgCCa -3'
miRNA:   3'- -GCgGCGCCA-UCGA------------CGCCgCGGG-GaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.