Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13939 | 3' | -50.9 | NC_003521.1 | + | 175748 | 0.66 | 0.999023 |
Target: 5'- gAGUCCGUGGAcccauguaGGGUccCCGG-GCUCg -3' miRNA: 3'- aUCAGGCACUU--------UUCGaaGGCCaUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 215431 | 0.66 | 0.999023 |
Target: 5'- --cUCCGUGAAgcaGAGCcgCgGGUGCUg -3' miRNA: 3'- aucAGGCACUU---UUCGaaGgCCAUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 94623 | 0.66 | 0.999023 |
Target: 5'- uUGGUuucCCGUGAGAcgaugaugccAGCUcgaUCCGGgACCg -3' miRNA: 3'- -AUCA---GGCACUUU----------UCGA---AGGCCaUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 186540 | 0.66 | 0.998818 |
Target: 5'- gGGcUCCGUGGGAGGCagggCCGGcACg- -3' miRNA: 3'- aUC-AGGCACUUUUCGaa--GGCCaUGgg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 190550 | 0.66 | 0.998576 |
Target: 5'- -uGUCCGUGAAgcGCcgCUcGUACUCg -3' miRNA: 3'- auCAGGCACUUuuCGaaGGcCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 111785 | 0.66 | 0.998576 |
Target: 5'- ---cUCGUGGAcuuuGAGUUUCUgcgGGUGCCCu -3' miRNA: 3'- aucaGGCACUU----UUCGAAGG---CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 227885 | 0.66 | 0.998293 |
Target: 5'- cGGgccgCCGUGuugGAGGGCcgaCCGGcGCCCa -3' miRNA: 3'- aUCa---GGCAC---UUUUCGaa-GGCCaUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 187863 | 0.66 | 0.997585 |
Target: 5'- gAGUCCGcGGgcGAAGCgaccgCCGGcgaaGCCCc -3' miRNA: 3'- aUCAGGCaCU--UUUCGaa---GGCCa---UGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 188995 | 0.66 | 0.997585 |
Target: 5'- --cUCUGUGAcGAGUUacUCgaGGUACCCg -3' miRNA: 3'- aucAGGCACUuUUCGA--AGg-CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 89478 | 0.66 | 0.997585 |
Target: 5'- cGGUCCGcagagcggGAAGAGCaggaCGGU-CCCa -3' miRNA: 3'- aUCAGGCa-------CUUUUCGaag-GCCAuGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 209963 | 0.67 | 0.997148 |
Target: 5'- gGGUUCG-GAGAAGUUgCCGcGgacgGCCCa -3' miRNA: 3'- aUCAGGCaCUUUUCGAaGGC-Ca---UGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 192159 | 0.67 | 0.996075 |
Target: 5'- -uGUCCGUGAAGgacguGGCg-CCGccGCCCa -3' miRNA: 3'- auCAGGCACUUU-----UCGaaGGCcaUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 50649 | 0.67 | 0.996075 |
Target: 5'- -cGUCgGUGGuguGGGCcugcuaaccUUCUGGUACCUg -3' miRNA: 3'- auCAGgCACUu--UUCG---------AAGGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 154282 | 0.67 | 0.995426 |
Target: 5'- cAGUCgCGUGGAGcggggcggcacGGCgUCCGGgGCCg -3' miRNA: 3'- aUCAG-GCACUUU-----------UCGaAGGCCaUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 44473 | 0.68 | 0.992941 |
Target: 5'- cAGcCCGuUGAGGAuGCgcgUCCgcagGGUGCCCg -3' miRNA: 3'- aUCaGGC-ACUUUU-CGa--AGG----CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 147594 | 0.68 | 0.992941 |
Target: 5'- gAGUCCGaaGAAGGUgcCCagguGGUACCCg -3' miRNA: 3'- aUCAGGCacUUUUCGaaGG----CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 85452 | 0.68 | 0.992333 |
Target: 5'- -cGUCCGcgccggcgaGAAAGGUggucgucguggugCCGGUGCCCg -3' miRNA: 3'- auCAGGCa--------CUUUUCGaa-----------GGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 29297 | 0.68 | 0.990754 |
Target: 5'- gUGGUCCGUGGAGAacuGCUcUCCGGa---- -3' miRNA: 3'- -AUCAGGCACUUUU---CGA-AGGCCauggg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 124945 | 0.68 | 0.990004 |
Target: 5'- cAGUCCGUGGGugggcacgugcagcAGgaUCUGGUugCCc -3' miRNA: 3'- aUCAGGCACUUu-------------UCgaAGGCCAugGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 236437 | 0.68 | 0.989478 |
Target: 5'- gGGUCUGcaccuGGAGCUUCUGGaACCUg -3' miRNA: 3'- aUCAGGCacu--UUUCGAAGGCCaUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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