miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 3' -50.9 NC_003521.1 + 94623 0.66 0.999023
Target:  5'- uUGGUuucCCGUGAGAcgaugaugccAGCUcgaUCCGGgACCg -3'
miRNA:   3'- -AUCA---GGCACUUU----------UCGA---AGGCCaUGGg -5'
13939 3' -50.9 NC_003521.1 + 175748 0.66 0.999023
Target:  5'- gAGUCCGUGGAcccauguaGGGUccCCGG-GCUCg -3'
miRNA:   3'- aUCAGGCACUU--------UUCGaaGGCCaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 215431 0.66 0.999023
Target:  5'- --cUCCGUGAAgcaGAGCcgCgGGUGCUg -3'
miRNA:   3'- aucAGGCACUU---UUCGaaGgCCAUGGg -5'
13939 3' -50.9 NC_003521.1 + 186540 0.66 0.998818
Target:  5'- gGGcUCCGUGGGAGGCagggCCGGcACg- -3'
miRNA:   3'- aUC-AGGCACUUUUCGaa--GGCCaUGgg -5'
13939 3' -50.9 NC_003521.1 + 190550 0.66 0.998576
Target:  5'- -uGUCCGUGAAgcGCcgCUcGUACUCg -3'
miRNA:   3'- auCAGGCACUUuuCGaaGGcCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 111785 0.66 0.998576
Target:  5'- ---cUCGUGGAcuuuGAGUUUCUgcgGGUGCCCu -3'
miRNA:   3'- aucaGGCACUU----UUCGAAGG---CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 227885 0.66 0.998293
Target:  5'- cGGgccgCCGUGuugGAGGGCcgaCCGGcGCCCa -3'
miRNA:   3'- aUCa---GGCAC---UUUUCGaa-GGCCaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 89478 0.66 0.997585
Target:  5'- cGGUCCGcagagcggGAAGAGCaggaCGGU-CCCa -3'
miRNA:   3'- aUCAGGCa-------CUUUUCGaag-GCCAuGGG- -5'
13939 3' -50.9 NC_003521.1 + 188995 0.66 0.997585
Target:  5'- --cUCUGUGAcGAGUUacUCgaGGUACCCg -3'
miRNA:   3'- aucAGGCACUuUUCGA--AGg-CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 187863 0.66 0.997585
Target:  5'- gAGUCCGcGGgcGAAGCgaccgCCGGcgaaGCCCc -3'
miRNA:   3'- aUCAGGCaCU--UUUCGaa---GGCCa---UGGG- -5'
13939 3' -50.9 NC_003521.1 + 209963 0.67 0.997148
Target:  5'- gGGUUCG-GAGAAGUUgCCGcGgacgGCCCa -3'
miRNA:   3'- aUCAGGCaCUUUUCGAaGGC-Ca---UGGG- -5'
13939 3' -50.9 NC_003521.1 + 192159 0.67 0.996075
Target:  5'- -uGUCCGUGAAGgacguGGCg-CCGccGCCCa -3'
miRNA:   3'- auCAGGCACUUU-----UCGaaGGCcaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 50649 0.67 0.996075
Target:  5'- -cGUCgGUGGuguGGGCcugcuaaccUUCUGGUACCUg -3'
miRNA:   3'- auCAGgCACUu--UUCG---------AAGGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 154282 0.67 0.995426
Target:  5'- cAGUCgCGUGGAGcggggcggcacGGCgUCCGGgGCCg -3'
miRNA:   3'- aUCAG-GCACUUU-----------UCGaAGGCCaUGGg -5'
13939 3' -50.9 NC_003521.1 + 147594 0.68 0.992941
Target:  5'- gAGUCCGaaGAAGGUgcCCagguGGUACCCg -3'
miRNA:   3'- aUCAGGCacUUUUCGaaGG----CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 44473 0.68 0.992941
Target:  5'- cAGcCCGuUGAGGAuGCgcgUCCgcagGGUGCCCg -3'
miRNA:   3'- aUCaGGC-ACUUUU-CGa--AGG----CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 85452 0.68 0.992333
Target:  5'- -cGUCCGcgccggcgaGAAAGGUggucgucguggugCCGGUGCCCg -3'
miRNA:   3'- auCAGGCa--------CUUUUCGaa-----------GGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 29297 0.68 0.990754
Target:  5'- gUGGUCCGUGGAGAacuGCUcUCCGGa---- -3'
miRNA:   3'- -AUCAGGCACUUUU---CGA-AGGCCauggg -5'
13939 3' -50.9 NC_003521.1 + 124945 0.68 0.990004
Target:  5'- cAGUCCGUGGGugggcacgugcagcAGgaUCUGGUugCCc -3'
miRNA:   3'- aUCAGGCACUUu-------------UCgaAGGCCAugGG- -5'
13939 3' -50.9 NC_003521.1 + 105798 0.68 0.989478
Target:  5'- ---aCCGUGAcgcAGGCca-CGGUGCCCg -3'
miRNA:   3'- aucaGGCACUu--UUCGaagGCCAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.