miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 3' -50.9 NC_003521.1 + 6799 1.12 0.009308
Target:  5'- gUAGUCCGUGAAAAGCUUCCGGUACCCg -3'
miRNA:   3'- -AUCAGGCACUUUUCGAAGGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 143909 0.8 0.572047
Target:  5'- aGGUCCGUGuGGAAGCg-CCGGUGCaCCg -3'
miRNA:   3'- aUCAGGCAC-UUUUCGaaGGCCAUG-GG- -5'
13939 3' -50.9 NC_003521.1 + 100847 0.74 0.882152
Target:  5'- gGGUCgGUGAGAGGCUccggCCGGgacUGCuCCa -3'
miRNA:   3'- aUCAGgCACUUUUCGAa---GGCC---AUG-GG- -5'
13939 3' -50.9 NC_003521.1 + 71986 0.72 0.945508
Target:  5'- -cGUCCGUGAcgcgcAGCUcgCUGGgGCCCa -3'
miRNA:   3'- auCAGGCACUuu---UCGAa-GGCCaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 85406 0.72 0.945508
Target:  5'- uUGG-CCGgcagcAGGCcUCCGGUGCCCa -3'
miRNA:   3'- -AUCaGGCacuu-UUCGaAGGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 162305 0.71 0.953916
Target:  5'- gAGUCCGcGGAAuccGCgucgcgugUCCGGUcgGCCCg -3'
miRNA:   3'- aUCAGGCaCUUUu--CGa-------AGGCCA--UGGG- -5'
13939 3' -50.9 NC_003521.1 + 196324 0.71 0.957772
Target:  5'- cGGaCCGcGGAAGGCggCCGGUgcugGCCCu -3'
miRNA:   3'- aUCaGGCaCUUUUCGaaGGCCA----UGGG- -5'
13939 3' -50.9 NC_003521.1 + 182261 0.7 0.968
Target:  5'- cUAG-CCGUGAuuGGCUUgaGGUACUg -3'
miRNA:   3'- -AUCaGGCACUuuUCGAAggCCAUGGg -5'
13939 3' -50.9 NC_003521.1 + 110532 0.69 0.981755
Target:  5'- aGGUCUGcUGGAAGGCgggccgaugcaccugUUCCGGgugAUCCa -3'
miRNA:   3'- aUCAGGC-ACUUUUCG---------------AAGGCCa--UGGG- -5'
13939 3' -50.9 NC_003521.1 + 41043 0.69 0.982952
Target:  5'- gAGUCCG-GAGucgccGAGCUUCCGGcuUCUg -3'
miRNA:   3'- aUCAGGCaCUU-----UUCGAAGGCCauGGG- -5'
13939 3' -50.9 NC_003521.1 + 81286 0.69 0.984813
Target:  5'- -cGUCCGUGcuguuguaaGAGAGCUgaCUGGUGCUg -3'
miRNA:   3'- auCAGGCAC---------UUUUCGAa-GGCCAUGGg -5'
13939 3' -50.9 NC_003521.1 + 236437 0.68 0.989478
Target:  5'- gGGUCUGcaccuGGAGCUUCUGGaACCUg -3'
miRNA:   3'- aUCAGGCacu--UUUCGAAGGCCaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 124945 0.68 0.990004
Target:  5'- cAGUCCGUGGGugggcacgugcagcAGgaUCUGGUugCCc -3'
miRNA:   3'- aUCAGGCACUUu-------------UCgaAGGCCAugGG- -5'
13939 3' -50.9 NC_003521.1 + 85452 0.68 0.992333
Target:  5'- -cGUCCGcgccggcgaGAAAGGUggucgucguggugCCGGUGCCCg -3'
miRNA:   3'- auCAGGCa--------CUUUUCGaa-----------GGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 147594 0.68 0.992941
Target:  5'- gAGUCCGaaGAAGGUgcCCagguGGUACCCg -3'
miRNA:   3'- aUCAGGCacUUUUCGaaGG----CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 44473 0.68 0.992941
Target:  5'- cAGcCCGuUGAGGAuGCgcgUCCgcagGGUGCCCg -3'
miRNA:   3'- aUCaGGC-ACUUUU-CGa--AGG----CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 105798 0.68 0.989478
Target:  5'- ---aCCGUGAcgcAGGCca-CGGUGCCCg -3'
miRNA:   3'- aucaGGCACUu--UUCGaagGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 29297 0.68 0.990754
Target:  5'- gUGGUCCGUGGAGAacuGCUcUCCGGa---- -3'
miRNA:   3'- -AUCAGGCACUUUU---CGA-AGGCCauggg -5'
13939 3' -50.9 NC_003521.1 + 180165 0.68 0.989343
Target:  5'- -cGUCCGUGAagccguaGAGGCgUCCGG-GCUUg -3'
miRNA:   3'- auCAGGCACU-------UUUCGaAGGCCaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 134855 0.68 0.989343
Target:  5'- cUGGUCCGUGAuGAGCacguugUUCUgcgcgaucuuguuGGUGCCg -3'
miRNA:   3'- -AUCAGGCACUuUUCG------AAGG-------------CCAUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.