miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 240813 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 237110 0.67 0.999908
Target:  5'- cCGGGGCACCGUCAgCGCggaggUCUggCGCGAg- -3'
miRNA:   3'- -GUUUUGUGGCAGU-GUG-----AGA--GUGCUag -5'
13939 5' -48 NC_003521.1 + 227338 0.66 0.99996
Target:  5'- -----gACCGUCAuCugUCUCgacuGCGGUCc -3'
miRNA:   3'- guuuugUGGCAGU-GugAGAG----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 226532 0.68 0.999662
Target:  5'- uGAAACACCacGUaggcguggagaugaCGCugUCgUCACGAUCg -3'
miRNA:   3'- gUUUUGUGG--CA--------------GUGugAG-AGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 225959 0.66 0.999947
Target:  5'- aAAAACuCCGUCACGCUgUuggcCACGcgCc -3'
miRNA:   3'- gUUUUGuGGCAGUGUGAgA----GUGCuaG- -5'
13939 5' -48 NC_003521.1 + 225523 0.67 0.99975
Target:  5'- --cGGCGCCGUCGCGCgUCg-ACGAa- -3'
miRNA:   3'- guuUUGUGGCAGUGUG-AGagUGCUag -5'
13939 5' -48 NC_003521.1 + 223949 0.66 0.99996
Target:  5'- cCAGAugGCCG-UACACUUcgauguaGCGGUCg -3'
miRNA:   3'- -GUUUugUGGCaGUGUGAGag-----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 221270 0.66 0.999947
Target:  5'- gCAGAA-GCCGcaCACGCUCaUCAgGAUCa -3'
miRNA:   3'- -GUUUUgUGGCa-GUGUGAG-AGUgCUAG- -5'
13939 5' -48 NC_003521.1 + 215683 0.67 0.999861
Target:  5'- cCAGAACGCCGUaC-CGC-CUCcuauauaccgagaagGCGAUCa -3'
miRNA:   3'- -GUUUUGUGGCA-GuGUGaGAG---------------UGCUAG- -5'
13939 5' -48 NC_003521.1 + 215300 0.74 0.964103
Target:  5'- --uGGCcCUGUCGCACUUUCACGAg- -3'
miRNA:   3'- guuUUGuGGCAGUGUGAGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 214613 0.81 0.746707
Target:  5'- gGGAGCACCGccugCGCGCUCUCugGcgCg -3'
miRNA:   3'- gUUUUGUGGCa---GUGUGAGAGugCuaG- -5'
13939 5' -48 NC_003521.1 + 208019 0.66 0.99996
Target:  5'- gGAGACAUCGUCACGCcuaUCAUa--- -3'
miRNA:   3'- gUUUUGUGGCAGUGUGag-AGUGcuag -5'
13939 5' -48 NC_003521.1 + 200502 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 198222 0.75 0.952832
Target:  5'- ----gUACCGUCACGCUgUCGCGcuAUCa -3'
miRNA:   3'- guuuuGUGGCAGUGUGAgAGUGC--UAG- -5'
13939 5' -48 NC_003521.1 + 195860 0.69 0.998878
Target:  5'- --cAGCGCUGUCGCcucGCUCUCGgGAc- -3'
miRNA:   3'- guuUUGUGGCAGUG---UGAGAGUgCUag -5'
13939 5' -48 NC_003521.1 + 194515 0.71 0.995508
Target:  5'- aAGAugGCCGUCAUAgaUUCgcuGCGAUCg -3'
miRNA:   3'- gUUUugUGGCAGUGUgaGAG---UGCUAG- -5'
13939 5' -48 NC_003521.1 + 193138 0.7 0.99673
Target:  5'- ----cCGCCGUCGCGCUCggaagcacaagUCGCGGcgUCg -3'
miRNA:   3'- guuuuGUGGCAGUGUGAG-----------AGUGCU--AG- -5'
13939 5' -48 NC_003521.1 + 192694 0.67 0.999881
Target:  5'- aCGGAgguGCACagguCGUCGCGCUCguccCGCGAUa -3'
miRNA:   3'- -GUUU---UGUG----GCAGUGUGAGa---GUGCUAg -5'
13939 5' -48 NC_003521.1 + 186981 0.69 0.998641
Target:  5'- gAGGACGCCGUCGCGCggaaagUCAgCGAg- -3'
miRNA:   3'- gUUUUGUGGCAGUGUGag----AGU-GCUag -5'
13939 5' -48 NC_003521.1 + 184431 0.66 0.999978
Target:  5'- --cGACGCCGcagguaguguugUCGuCGCUCgcccaugCACGAUCa -3'
miRNA:   3'- guuUUGUGGC------------AGU-GUGAGa------GUGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.