Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13939 | 5' | -48 | NC_003521.1 | + | 264 | 0.67 | 0.999803 |
Target: 5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3' miRNA: 3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 2724 | 0.7 | 0.996159 |
Target: 5'- gGGAGCGCCGUCAcCGC-CUCGCu--- -3' miRNA: 3'- gUUUUGUGGCAGU-GUGaGAGUGcuag -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 6593 | 0.66 | 0.99996 |
Target: 5'- --uGGCGCgCGUUAuccuCAgUCUCAUGAUCa -3' miRNA: 3'- guuUUGUG-GCAGU----GUgAGAGUGCUAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 6760 | 1.09 | 0.026367 |
Target: 5'- uCAAAACACCGUCACACUCUCACGAUCc -3' miRNA: 3'- -GUUUUGUGGCAGUGUGAGAGUGCUAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 11204 | 0.71 | 0.99477 |
Target: 5'- uCAGA--GCCGUCGCGC-CUCACG-UCc -3' miRNA: 3'- -GUUUugUGGCAGUGUGaGAGUGCuAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 12984 | 0.66 | 0.99997 |
Target: 5'- aUAGAACauACCGUUggcaACGCUCgcguuaccCGCGGUCg -3' miRNA: 3'- -GUUUUG--UGGCAG----UGUGAGa-------GUGCUAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 13540 | 0.66 | 0.999978 |
Target: 5'- gAAGACGCCGUCACccaccauacaGCUacacaGCGAUa -3' miRNA: 3'- gUUUUGUGGCAGUG----------UGAgag--UGCUAg -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 19807 | 0.66 | 0.99996 |
Target: 5'- -cGAGCGCCGUCGCAgUUCUgGCcuccuAUCg -3' miRNA: 3'- guUUUGUGGCAGUGU-GAGAgUGc----UAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 24678 | 0.67 | 0.999908 |
Target: 5'- ---uGCGCCGUCugGCUUUCuAUGcUCc -3' miRNA: 3'- guuuUGUGGCAGugUGAGAG-UGCuAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 36679 | 0.68 | 0.999388 |
Target: 5'- aCGAGGCcuucuCCGUCACGCUCgaggCGCuGUUg -3' miRNA: 3'- -GUUUUGu----GGCAGUGUGAGa---GUGcUAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 39296 | 0.69 | 0.998364 |
Target: 5'- --cAGCGgCGUCACACUCUCccaggcagcaucGCGAc- -3' miRNA: 3'- guuUUGUgGCAGUGUGAGAG------------UGCUag -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 39814 | 0.68 | 0.999604 |
Target: 5'- uGGGAC-CCGUCuuggACAgUCUCGCGcgCg -3' miRNA: 3'- gUUUUGuGGCAG----UGUgAGAGUGCuaG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 41361 | 0.67 | 0.99975 |
Target: 5'- ----cCACCGUCGCAC-CUaCGCGcgCc -3' miRNA: 3'- guuuuGUGGCAGUGUGaGA-GUGCuaG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 42447 | 0.67 | 0.999881 |
Target: 5'- gGAAACGCCGU-GCugUCUgCACGugguuuUCg -3' miRNA: 3'- gUUUUGUGGCAgUGugAGA-GUGCu-----AG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 47150 | 0.69 | 0.998364 |
Target: 5'- -uAGACGCCGcCGCGCUUgccgacgagCACGAUg -3' miRNA: 3'- guUUUGUGGCaGUGUGAGa--------GUGCUAg -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 52605 | 0.68 | 0.999604 |
Target: 5'- cCGAAAgGCCGgcagUACGCUCUC-CGGa- -3' miRNA: 3'- -GUUUUgUGGCa---GUGUGAGAGuGCUag -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 52909 | 0.71 | 0.99195 |
Target: 5'- uCAAGACGCaCGUCGuCAUcgaCUCGCGAUUg -3' miRNA: 3'- -GUUUUGUG-GCAGU-GUGa--GAGUGCUAG- -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 53366 | 0.67 | 0.999881 |
Target: 5'- --cAGCACCGUCcCGCUgaCGCGGc- -3' miRNA: 3'- guuUUGUGGCAGuGUGAgaGUGCUag -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 55382 | 0.66 | 0.999978 |
Target: 5'- aAGAGCGgCGUCACGCaauggUC-CACGAa- -3' miRNA: 3'- gUUUUGUgGCAGUGUG-----AGaGUGCUag -5' |
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13939 | 5' | -48 | NC_003521.1 | + | 57164 | 0.67 | 0.999881 |
Target: 5'- --cGGCGCUGUCGCgacggccaGCUCUCGCuuUCc -3' miRNA: 3'- guuUUGUGGCAGUG--------UGAGAGUGcuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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