miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 264 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 2724 0.7 0.996159
Target:  5'- gGGAGCGCCGUCAcCGC-CUCGCu--- -3'
miRNA:   3'- gUUUUGUGGCAGU-GUGaGAGUGcuag -5'
13939 5' -48 NC_003521.1 + 6593 0.66 0.99996
Target:  5'- --uGGCGCgCGUUAuccuCAgUCUCAUGAUCa -3'
miRNA:   3'- guuUUGUG-GCAGU----GUgAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 6760 1.09 0.026367
Target:  5'- uCAAAACACCGUCACACUCUCACGAUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 11204 0.71 0.99477
Target:  5'- uCAGA--GCCGUCGCGC-CUCACG-UCc -3'
miRNA:   3'- -GUUUugUGGCAGUGUGaGAGUGCuAG- -5'
13939 5' -48 NC_003521.1 + 12984 0.66 0.99997
Target:  5'- aUAGAACauACCGUUggcaACGCUCgcguuaccCGCGGUCg -3'
miRNA:   3'- -GUUUUG--UGGCAG----UGUGAGa-------GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 13540 0.66 0.999978
Target:  5'- gAAGACGCCGUCACccaccauacaGCUacacaGCGAUa -3'
miRNA:   3'- gUUUUGUGGCAGUG----------UGAgag--UGCUAg -5'
13939 5' -48 NC_003521.1 + 19807 0.66 0.99996
Target:  5'- -cGAGCGCCGUCGCAgUUCUgGCcuccuAUCg -3'
miRNA:   3'- guUUUGUGGCAGUGU-GAGAgUGc----UAG- -5'
13939 5' -48 NC_003521.1 + 24678 0.67 0.999908
Target:  5'- ---uGCGCCGUCugGCUUUCuAUGcUCc -3'
miRNA:   3'- guuuUGUGGCAGugUGAGAG-UGCuAG- -5'
13939 5' -48 NC_003521.1 + 36679 0.68 0.999388
Target:  5'- aCGAGGCcuucuCCGUCACGCUCgaggCGCuGUUg -3'
miRNA:   3'- -GUUUUGu----GGCAGUGUGAGa---GUGcUAG- -5'
13939 5' -48 NC_003521.1 + 39296 0.69 0.998364
Target:  5'- --cAGCGgCGUCACACUCUCccaggcagcaucGCGAc- -3'
miRNA:   3'- guuUUGUgGCAGUGUGAGAG------------UGCUag -5'
13939 5' -48 NC_003521.1 + 39814 0.68 0.999604
Target:  5'- uGGGAC-CCGUCuuggACAgUCUCGCGcgCg -3'
miRNA:   3'- gUUUUGuGGCAG----UGUgAGAGUGCuaG- -5'
13939 5' -48 NC_003521.1 + 41361 0.67 0.99975
Target:  5'- ----cCACCGUCGCAC-CUaCGCGcgCc -3'
miRNA:   3'- guuuuGUGGCAGUGUGaGA-GUGCuaG- -5'
13939 5' -48 NC_003521.1 + 42447 0.67 0.999881
Target:  5'- gGAAACGCCGU-GCugUCUgCACGugguuuUCg -3'
miRNA:   3'- gUUUUGUGGCAgUGugAGA-GUGCu-----AG- -5'
13939 5' -48 NC_003521.1 + 47150 0.69 0.998364
Target:  5'- -uAGACGCCGcCGCGCUUgccgacgagCACGAUg -3'
miRNA:   3'- guUUUGUGGCaGUGUGAGa--------GUGCUAg -5'
13939 5' -48 NC_003521.1 + 52605 0.68 0.999604
Target:  5'- cCGAAAgGCCGgcagUACGCUCUC-CGGa- -3'
miRNA:   3'- -GUUUUgUGGCa---GUGUGAGAGuGCUag -5'
13939 5' -48 NC_003521.1 + 52909 0.71 0.99195
Target:  5'- uCAAGACGCaCGUCGuCAUcgaCUCGCGAUUg -3'
miRNA:   3'- -GUUUUGUG-GCAGU-GUGa--GAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 53366 0.67 0.999881
Target:  5'- --cAGCACCGUCcCGCUgaCGCGGc- -3'
miRNA:   3'- guuUUGUGGCAGuGUGAgaGUGCUag -5'
13939 5' -48 NC_003521.1 + 55382 0.66 0.999978
Target:  5'- aAGAGCGgCGUCACGCaauggUC-CACGAa- -3'
miRNA:   3'- gUUUUGUgGCAGUGUG-----AGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 57164 0.67 0.999881
Target:  5'- --cGGCGCUGUCGCgacggccaGCUCUCGCuuUCc -3'
miRNA:   3'- guuUUGUGGCAGUG--------UGAGAGUGcuAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.