miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 57610 0.71 0.99195
Target:  5'- uCAGcgUGCCGUCGCGCUCcaggCACG-UCa -3'
miRNA:   3'- -GUUuuGUGGCAGUGUGAGa---GUGCuAG- -5'
13939 5' -48 NC_003521.1 + 57677 0.71 0.992999
Target:  5'- --cGACACCGUCugGgUCUgCACGGg- -3'
miRNA:   3'- guuUUGUGGCAGugUgAGA-GUGCUag -5'
13939 5' -48 NC_003521.1 + 57852 0.68 0.999506
Target:  5'- -cGAACGCCGUCGCuGCUagaCACGGauUCg -3'
miRNA:   3'- guUUUGUGGCAGUG-UGAga-GUGCU--AG- -5'
13939 5' -48 NC_003521.1 + 61090 0.71 0.99477
Target:  5'- gGAGAuCGCCGUCAUcCUCUCGCa--- -3'
miRNA:   3'- gUUUU-GUGGCAGUGuGAGAGUGcuag -5'
13939 5' -48 NC_003521.1 + 62357 0.67 0.999803
Target:  5'- --cAGCACgGUgcaCGCGCUCUCGCGccccuUCa -3'
miRNA:   3'- guuUUGUGgCA---GUGUGAGAGUGCu----AG- -5'
13939 5' -48 NC_003521.1 + 69672 0.66 0.999964
Target:  5'- ---cGCGCCGUCACcgucccgcgucugcuGCgUCUCACGuggCa -3'
miRNA:   3'- guuuUGUGGCAGUG---------------UG-AGAGUGCua-G- -5'
13939 5' -48 NC_003521.1 + 73476 0.7 0.99804
Target:  5'- aGAGGCGCCG-CAgGCgCUCGgGGUCg -3'
miRNA:   3'- gUUUUGUGGCaGUgUGaGAGUgCUAG- -5'
13939 5' -48 NC_003521.1 + 74948 0.66 0.99997
Target:  5'- ----cCGCCGUCGCuGCUgCUUGCGGUa -3'
miRNA:   3'- guuuuGUGGCAGUG-UGA-GAGUGCUAg -5'
13939 5' -48 NC_003521.1 + 75090 0.82 0.675178
Target:  5'- gCGGGACGCCGUCGCGCUCggCGCcGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGa-GUGcUAG- -5'
13939 5' -48 NC_003521.1 + 82890 0.66 0.99993
Target:  5'- --cGGCACCcgcuguuggcgcGUCGcCACUCUCAucCGGUCu -3'
miRNA:   3'- guuUUGUGG------------CAGU-GUGAGAGU--GCUAG- -5'
13939 5' -48 NC_003521.1 + 85800 0.7 0.99804
Target:  5'- aCAAGACGUCGUCACGCUCgggaaaguccCGCGGg- -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGa---------GUGCUag -5'
13939 5' -48 NC_003521.1 + 88954 0.68 0.999247
Target:  5'- gAGAGCGCCGcCAgAacCUCUCGCG-UCu -3'
miRNA:   3'- gUUUUGUGGCaGUgU--GAGAGUGCuAG- -5'
13939 5' -48 NC_003521.1 + 89576 0.66 0.999959
Target:  5'- cCGAAACGCCGUUuauCGC-CUCgccaaaccgcgaaACGGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGu--GUGaGAG-------------UGCUAG- -5'
13939 5' -48 NC_003521.1 + 96791 0.67 0.999847
Target:  5'- --cAGCAgCGgcgGCGCUCgggCACGAUCg -3'
miRNA:   3'- guuUUGUgGCag-UGUGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 101239 0.68 0.999684
Target:  5'- gAGAACGCCGUgCGCGC-CgggCACGGc- -3'
miRNA:   3'- gUUUUGUGGCA-GUGUGaGa--GUGCUag -5'
13939 5' -48 NC_003521.1 + 102491 0.75 0.948598
Target:  5'- cCGAGACGCCGUCGCGCagC-CGCaGGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGa-GaGUG-CUAG- -5'
13939 5' -48 NC_003521.1 + 105193 0.66 0.999978
Target:  5'- --cGACGgCGUCGCGCUCgucgUCAUcGUCg -3'
miRNA:   3'- guuUUGUgGCAGUGUGAG----AGUGcUAG- -5'
13939 5' -48 NC_003521.1 + 106873 0.75 0.956824
Target:  5'- --uGGCAUCGUCcCACgaugCUCACGGUCc -3'
miRNA:   3'- guuUUGUGGCAGuGUGa---GAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 114030 0.75 0.948598
Target:  5'- -cGAugACCGUCGCGCUCUCcuccuCGAc- -3'
miRNA:   3'- guUUugUGGCAGUGUGAGAGu----GCUag -5'
13939 5' -48 NC_003521.1 + 116035 0.68 0.999247
Target:  5'- ---uGCGCCGUCACACcggcCUUcUGAUCu -3'
miRNA:   3'- guuuUGUGGCAGUGUGa---GAGuGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.