miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 223949 0.66 0.99996
Target:  5'- cCAGAugGCCG-UACACUUcgauguaGCGGUCg -3'
miRNA:   3'- -GUUUugUGGCaGUGUGAGag-----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 160507 0.66 0.999978
Target:  5'- aGAAGCGCgCG-CGC-CUUUCACGAg- -3'
miRNA:   3'- gUUUUGUG-GCaGUGuGAGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 184431 0.66 0.999978
Target:  5'- --cGACGCCGcagguaguguugUCGuCGCUCgcccaugCACGAUCa -3'
miRNA:   3'- guuUUGUGGC------------AGU-GUGAGa------GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 53366 0.67 0.999881
Target:  5'- --cAGCACCGUCcCGCUgaCGCGGc- -3'
miRNA:   3'- guuUUGUGGCAGuGUGAgaGUGCUag -5'
13939 5' -48 NC_003521.1 + 192694 0.67 0.999881
Target:  5'- aCGGAgguGCACagguCGUCGCGCUCguccCGCGAUa -3'
miRNA:   3'- -GUUU---UGUG----GCAGUGUGAGa---GUGCUAg -5'
13939 5' -48 NC_003521.1 + 127550 0.67 0.999908
Target:  5'- gCAGcACGCCGUCGgccaggUGCUCg-GCGAUCa -3'
miRNA:   3'- -GUUuUGUGGCAGU------GUGAGagUGCUAG- -5'
13939 5' -48 NC_003521.1 + 62357 0.67 0.999803
Target:  5'- --cAGCACgGUgcaCGCGCUCUCGCGccccuUCa -3'
miRNA:   3'- guuUUGUGgCA---GUGUGAGAGUGCu----AG- -5'
13939 5' -48 NC_003521.1 + 240813 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 264 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 149071 0.67 0.99975
Target:  5'- --cGACGCgGcCGCGCUCUCGCa--- -3'
miRNA:   3'- guuUUGUGgCaGUGUGAGAGUGcuag -5'
13939 5' -48 NC_003521.1 + 151030 0.67 0.999847
Target:  5'- cCGGGACGCCGaCGCGCUC--GCGGa- -3'
miRNA:   3'- -GUUUUGUGGCaGUGUGAGagUGCUag -5'
13939 5' -48 NC_003521.1 + 57164 0.67 0.999881
Target:  5'- --cGGCGCUGUCGCgacggccaGCUCUCGCuuUCc -3'
miRNA:   3'- guuUUGUGGCAGUG--------UGAGAGUGcuAG- -5'
13939 5' -48 NC_003521.1 + 237110 0.67 0.999908
Target:  5'- cCGGGGCACCGUCAgCGCggaggUCUggCGCGAg- -3'
miRNA:   3'- -GUUUUGUGGCAGU-GUG-----AGA--GUGCUag -5'
13939 5' -48 NC_003521.1 + 24678 0.67 0.999908
Target:  5'- ---uGCGCCGUCugGCUUUCuAUGcUCc -3'
miRNA:   3'- guuuUGUGGCAGugUGAGAG-UGCuAG- -5'
13939 5' -48 NC_003521.1 + 176710 0.67 0.999908
Target:  5'- uGGAGcCACCGUcCACGCUgUUugGAg- -3'
miRNA:   3'- gUUUU-GUGGCA-GUGUGAgAGugCUag -5'
13939 5' -48 NC_003521.1 + 160113 0.67 0.999908
Target:  5'- aGAAGCaACCGUUACGCUCgCGCc--- -3'
miRNA:   3'- gUUUUG-UGGCAGUGUGAGaGUGcuag -5'
13939 5' -48 NC_003521.1 + 42447 0.67 0.999881
Target:  5'- gGAAACGCCGU-GCugUCUgCACGugguuuUCg -3'
miRNA:   3'- gUUUUGUGGCAgUGugAGA-GUGCu-----AG- -5'
13939 5' -48 NC_003521.1 + 41361 0.67 0.99975
Target:  5'- ----cCACCGUCGCAC-CUaCGCGcgCc -3'
miRNA:   3'- guuuuGUGGCAGUGUGaGA-GUGCuaG- -5'
13939 5' -48 NC_003521.1 + 137768 0.67 0.99975
Target:  5'- gGGAGCucuuCCGUCACGCccuggaaCUCugGAUa -3'
miRNA:   3'- gUUUUGu---GGCAGUGUGa------GAGugCUAg -5'
13939 5' -48 NC_003521.1 + 225523 0.67 0.99975
Target:  5'- --cGGCGCCGUCGCGCgUCg-ACGAa- -3'
miRNA:   3'- guuUUGUGGCAGUGUG-AGagUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.