miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 82890 0.66 0.99993
Target:  5'- --cGGCACCcgcuguuggcgcGUCGcCACUCUCAucCGGUCu -3'
miRNA:   3'- guuUUGUGG------------CAGU-GUGAGAGU--GCUAG- -5'
13939 5' -48 NC_003521.1 + 55382 0.66 0.999978
Target:  5'- aAGAGCGgCGUCACGCaauggUC-CACGAa- -3'
miRNA:   3'- gUUUUGUgGCAGUGUG-----AGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 148035 0.66 0.99997
Target:  5'- aGGAAgGCCGUCAgGCUgUCGCc--- -3'
miRNA:   3'- gUUUUgUGGCAGUgUGAgAGUGcuag -5'
13939 5' -48 NC_003521.1 + 19807 0.66 0.99996
Target:  5'- -cGAGCGCCGUCGCAgUUCUgGCcuccuAUCg -3'
miRNA:   3'- guUUUGUGGCAGUGU-GAGAgUGc----UAG- -5'
13939 5' -48 NC_003521.1 + 223949 0.66 0.99996
Target:  5'- cCAGAugGCCG-UACACUUcgauguaGCGGUCg -3'
miRNA:   3'- -GUUUugUGGCaGUGUGAGag-----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 89576 0.66 0.999959
Target:  5'- cCGAAACGCCGUUuauCGC-CUCgccaaaccgcgaaACGGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGu--GUGaGAG-------------UGCUAG- -5'
13939 5' -48 NC_003521.1 + 225959 0.66 0.999947
Target:  5'- aAAAACuCCGUCACGCUgUuggcCACGcgCc -3'
miRNA:   3'- gUUUUGuGGCAGUGUGAgA----GUGCuaG- -5'
13939 5' -48 NC_003521.1 + 221270 0.66 0.999947
Target:  5'- gCAGAA-GCCGcaCACGCUCaUCAgGAUCa -3'
miRNA:   3'- -GUUUUgUGGCa-GUGUGAG-AGUgCUAG- -5'
13939 5' -48 NC_003521.1 + 162289 0.66 0.999947
Target:  5'- ---uGCACCGUCACGCcgggagUC-CGCGGa- -3'
miRNA:   3'- guuuUGUGGCAGUGUG------AGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 126686 0.66 0.99993
Target:  5'- aAGGGCACCGcCAggcagUACUCgacCAUGAUCu -3'
miRNA:   3'- gUUUUGUGGCaGU-----GUGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 114030 0.75 0.948598
Target:  5'- -cGAugACCGUCGCGCUCUCcuccuCGAc- -3'
miRNA:   3'- guUUugUGGCAGUGUGAGAGu----GCUag -5'
13939 5' -48 NC_003521.1 + 127550 0.67 0.999908
Target:  5'- gCAGcACGCCGUCGgccaggUGCUCg-GCGAUCa -3'
miRNA:   3'- -GUUuUGUGGCAGU------GUGAGagUGCUAG- -5'
13939 5' -48 NC_003521.1 + 192694 0.67 0.999881
Target:  5'- aCGGAgguGCACagguCGUCGCGCUCguccCGCGAUa -3'
miRNA:   3'- -GUUU---UGUG----GCAGUGUGAGa---GUGCUAg -5'
13939 5' -48 NC_003521.1 + 53366 0.67 0.999881
Target:  5'- --cAGCACCGUCcCGCUgaCGCGGc- -3'
miRNA:   3'- guuUUGUGGCAGuGUGAgaGUGCUag -5'
13939 5' -48 NC_003521.1 + 215683 0.67 0.999861
Target:  5'- cCAGAACGCCGUaC-CGC-CUCcuauauaccgagaagGCGAUCa -3'
miRNA:   3'- -GUUUUGUGGCA-GuGUGaGAG---------------UGCUAG- -5'
13939 5' -48 NC_003521.1 + 96791 0.67 0.999847
Target:  5'- --cAGCAgCGgcgGCGCUCgggCACGAUCg -3'
miRNA:   3'- guuUUGUgGCag-UGUGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 62357 0.67 0.999803
Target:  5'- --cAGCACgGUgcaCGCGCUCUCGCGccccuUCa -3'
miRNA:   3'- guuUUGUGgCA---GUGUGAGAGUGCu----AG- -5'
13939 5' -48 NC_003521.1 + 240813 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 264 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 149071 0.67 0.99975
Target:  5'- --cGACGCgGcCGCGCUCUCGCa--- -3'
miRNA:   3'- guuUUGUGgCaGUGUGAGAGUGcuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.