miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 88954 0.68 0.999247
Target:  5'- gAGAGCGCCGcCAgAacCUCUCGCG-UCu -3'
miRNA:   3'- gUUUUGUGGCaGUgU--GAGAGUGCuAG- -5'
13939 5' -48 NC_003521.1 + 122884 0.69 0.999078
Target:  5'- --cGACGCCGUCAC-CgCUCGCGuugCu -3'
miRNA:   3'- guuUUGUGGCAGUGuGaGAGUGCua-G- -5'
13939 5' -48 NC_003521.1 + 195860 0.69 0.998878
Target:  5'- --cAGCGCUGUCGCcucGCUCUCGgGAc- -3'
miRNA:   3'- guuUUGUGGCAGUG---UGAGAGUgCUag -5'
13939 5' -48 NC_003521.1 + 186981 0.69 0.998641
Target:  5'- gAGGACGCCGUCGCGCggaaagUCAgCGAg- -3'
miRNA:   3'- gUUUUGUGGCAGUGUGag----AGU-GCUag -5'
13939 5' -48 NC_003521.1 + 47150 0.69 0.998364
Target:  5'- -uAGACGCCGcCGCGCUUgccgacgagCACGAUg -3'
miRNA:   3'- guUUUGUGGCaGUGUGAGa--------GUGCUAg -5'
13939 5' -48 NC_003521.1 + 39296 0.69 0.998364
Target:  5'- --cAGCGgCGUCACACUCUCccaggcagcaucGCGAc- -3'
miRNA:   3'- guuUUGUgGCAGUGUGAGAG------------UGCUag -5'
13939 5' -48 NC_003521.1 + 42447 0.67 0.999881
Target:  5'- gGAAACGCCGU-GCugUCUgCACGugguuuUCg -3'
miRNA:   3'- gUUUUGUGGCAgUGugAGA-GUGCu-----AG- -5'
13939 5' -48 NC_003521.1 + 176710 0.67 0.999908
Target:  5'- uGGAGcCACCGUcCACGCUgUUugGAg- -3'
miRNA:   3'- gUUUU-GUGGCA-GUGUGAgAGugCUag -5'
13939 5' -48 NC_003521.1 + 160113 0.67 0.999908
Target:  5'- aGAAGCaACCGUUACGCUCgCGCc--- -3'
miRNA:   3'- gUUUUG-UGGCAGUGUGAGaGUGcuag -5'
13939 5' -48 NC_003521.1 + 237110 0.67 0.999908
Target:  5'- cCGGGGCACCGUCAgCGCggaggUCUggCGCGAg- -3'
miRNA:   3'- -GUUUUGUGGCAGU-GUG-----AGA--GUGCUag -5'
13939 5' -48 NC_003521.1 + 24678 0.67 0.999908
Target:  5'- ---uGCGCCGUCugGCUUUCuAUGcUCc -3'
miRNA:   3'- guuuUGUGGCAGugUGAGAG-UGCuAG- -5'
13939 5' -48 NC_003521.1 + 208019 0.66 0.99996
Target:  5'- gGAGACAUCGUCACGCcuaUCAUa--- -3'
miRNA:   3'- gUUUUGUGGCAGUGUGag-AGUGcuag -5'
13939 5' -48 NC_003521.1 + 142202 0.66 0.99996
Target:  5'- -uGGGCGCCcaCGCGCUg-CACGGUCa -3'
miRNA:   3'- guUUUGUGGcaGUGUGAgaGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 227338 0.66 0.99996
Target:  5'- -----gACCGUCAuCugUCUCgacuGCGGUCc -3'
miRNA:   3'- guuuugUGGCAGU-GugAGAG----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 6593 0.66 0.99996
Target:  5'- --uGGCGCgCGUUAuccuCAgUCUCAUGAUCa -3'
miRNA:   3'- guuUUGUG-GCAGU----GUgAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 69672 0.66 0.999964
Target:  5'- ---cGCGCCGUCACcgucccgcgucugcuGCgUCUCACGuggCa -3'
miRNA:   3'- guuuUGUGGCAGUG---------------UG-AGAGUGCua-G- -5'
13939 5' -48 NC_003521.1 + 178545 0.66 0.99997
Target:  5'- -cGAAC-CCGUCcCGCUCguUCGCGcgCg -3'
miRNA:   3'- guUUUGuGGCAGuGUGAG--AGUGCuaG- -5'
13939 5' -48 NC_003521.1 + 74948 0.66 0.99997
Target:  5'- ----cCGCCGUCGCuGCUgCUUGCGGUa -3'
miRNA:   3'- guuuuGUGGCAGUG-UGA-GAGUGCUAg -5'
13939 5' -48 NC_003521.1 + 12984 0.66 0.99997
Target:  5'- aUAGAACauACCGUUggcaACGCUCgcguuaccCGCGGUCg -3'
miRNA:   3'- -GUUUUG--UGGCAG----UGUGAGa-------GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 167821 0.66 0.999977
Target:  5'- -cGAGCGCCGUCAUuaccgacacguccGCUCuaUCGCcGUCu -3'
miRNA:   3'- guUUUGUGGCAGUG-------------UGAG--AGUGcUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.