miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 116709 0.74 0.9674
Target:  5'- gGAAGCGCCGUC-CACUUcCACGGc- -3'
miRNA:   3'- gUUUUGUGGCAGuGUGAGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 119714 0.68 0.999506
Target:  5'- ---cACACUGUCGCGcCUCcaUCGCGAg- -3'
miRNA:   3'- guuuUGUGGCAGUGU-GAG--AGUGCUag -5'
13939 5' -48 NC_003521.1 + 122884 0.69 0.999078
Target:  5'- --cGACGCCGUCAC-CgCUCGCGuugCu -3'
miRNA:   3'- guuUUGUGGCAGUGuGaGAGUGCua-G- -5'
13939 5' -48 NC_003521.1 + 123163 0.68 0.999506
Target:  5'- aGAAGgGCCGgCGCACcgUCUCGCGGc- -3'
miRNA:   3'- gUUUUgUGGCaGUGUG--AGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 126686 0.66 0.99993
Target:  5'- aAGGGCACCGcCAggcagUACUCgacCAUGAUCu -3'
miRNA:   3'- gUUUUGUGGCaGU-----GUGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 127550 0.67 0.999908
Target:  5'- gCAGcACGCCGUCGgccaggUGCUCg-GCGAUCa -3'
miRNA:   3'- -GUUuUGUGGCAGU------GUGAGagUGCUAG- -5'
13939 5' -48 NC_003521.1 + 137768 0.67 0.99975
Target:  5'- gGGAGCucuuCCGUCACGCccuggaaCUCugGAUa -3'
miRNA:   3'- gUUUUGu---GGCAGUGUGa------GAGugCUAg -5'
13939 5' -48 NC_003521.1 + 141676 0.75 0.939394
Target:  5'- uCAGAGCACCGUCuCGCUCuuccccguuuaUCACG-UCg -3'
miRNA:   3'- -GUUUUGUGGCAGuGUGAG-----------AGUGCuAG- -5'
13939 5' -48 NC_003521.1 + 142202 0.66 0.99996
Target:  5'- -uGGGCGCCcaCGCGCUg-CACGGUCa -3'
miRNA:   3'- guUUUGUGGcaGUGUGAgaGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 143751 0.68 0.999388
Target:  5'- --uAGCACCGUCucGCuguGCUUgcgCGCGAUCu -3'
miRNA:   3'- guuUUGUGGCAG--UG---UGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 145912 0.71 0.993936
Target:  5'- gAGGGCACC-UCGCGCUCggCGCGGa- -3'
miRNA:   3'- gUUUUGUGGcAGUGUGAGa-GUGCUag -5'
13939 5' -48 NC_003521.1 + 148035 0.66 0.99997
Target:  5'- aGGAAgGCCGUCAgGCUgUCGCc--- -3'
miRNA:   3'- gUUUUgUGGCAGUgUGAgAGUGcuag -5'
13939 5' -48 NC_003521.1 + 149071 0.67 0.99975
Target:  5'- --cGACGCgGcCGCGCUCUCGCa--- -3'
miRNA:   3'- guuUUGUGgCaGUGUGAGAGUGcuag -5'
13939 5' -48 NC_003521.1 + 151030 0.67 0.999847
Target:  5'- cCGGGACGCCGaCGCGCUC--GCGGa- -3'
miRNA:   3'- -GUUUUGUGGCaGUGUGAGagUGCUag -5'
13939 5' -48 NC_003521.1 + 160113 0.67 0.999908
Target:  5'- aGAAGCaACCGUUACGCUCgCGCc--- -3'
miRNA:   3'- gUUUUG-UGGCAGUGUGAGaGUGcuag -5'
13939 5' -48 NC_003521.1 + 160507 0.66 0.999978
Target:  5'- aGAAGCGCgCG-CGC-CUUUCACGAg- -3'
miRNA:   3'- gUUUUGUG-GCaGUGuGAGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 162289 0.66 0.999947
Target:  5'- ---uGCACCGUCACGCcgggagUC-CGCGGa- -3'
miRNA:   3'- guuuUGUGGCAGUGUG------AGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 167821 0.66 0.999977
Target:  5'- -cGAGCGCCGUCAUuaccgacacguccGCUCuaUCGCcGUCu -3'
miRNA:   3'- guUUUGUGGCAGUG-------------UGAG--AGUGcUAG- -5'
13939 5' -48 NC_003521.1 + 170770 0.71 0.995076
Target:  5'- ---cACGCCGUCAUGuCUCcccucgugacgaucuUCGCGAUCg -3'
miRNA:   3'- guuuUGUGGCAGUGU-GAG---------------AGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 176710 0.67 0.999908
Target:  5'- uGGAGcCACCGUcCACGCUgUUugGAg- -3'
miRNA:   3'- gUUUU-GUGGCA-GUGUGAgAGugCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.