miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 194515 0.71 0.995508
Target:  5'- aAGAugGCCGUCAUAgaUUCgcuGCGAUCg -3'
miRNA:   3'- gUUUugUGGCAGUGUgaGAG---UGCUAG- -5'
13939 5' -48 NC_003521.1 + 102491 0.75 0.948598
Target:  5'- cCGAGACGCCGUCGCGCagC-CGCaGGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGa-GaGUG-CUAG- -5'
13939 5' -48 NC_003521.1 + 52909 0.71 0.99195
Target:  5'- uCAAGACGCaCGUCGuCAUcgaCUCGCGAUUg -3'
miRNA:   3'- -GUUUUGUG-GCAGU-GUGa--GAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 57610 0.71 0.99195
Target:  5'- uCAGcgUGCCGUCGCGCUCcaggCACG-UCa -3'
miRNA:   3'- -GUUuuGUGGCAGUGUGAGa---GUGCuAG- -5'
13939 5' -48 NC_003521.1 + 39296 0.69 0.998364
Target:  5'- --cAGCGgCGUCACACUCUCccaggcagcaucGCGAc- -3'
miRNA:   3'- guuUUGUgGCAGUGUGAGAG------------UGCUag -5'
13939 5' -48 NC_003521.1 + 55382 0.66 0.999978
Target:  5'- aAGAGCGgCGUCACGCaauggUC-CACGAa- -3'
miRNA:   3'- gUUUUGUgGCAGUGUG-----AGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 148035 0.66 0.99997
Target:  5'- aGGAAgGCCGUCAgGCUgUCGCc--- -3'
miRNA:   3'- gUUUUgUGGCAGUgUGAgAGUGcuag -5'
13939 5' -48 NC_003521.1 + 137768 0.67 0.99975
Target:  5'- gGGAGCucuuCCGUCACGCccuggaaCUCugGAUa -3'
miRNA:   3'- gUUUUGu---GGCAGUGUGa------GAGugCUAg -5'
13939 5' -48 NC_003521.1 + 225523 0.67 0.99975
Target:  5'- --cGGCGCCGUCGCGCgUCg-ACGAa- -3'
miRNA:   3'- guuUUGUGGCAGUGUG-AGagUGCUag -5'
13939 5' -48 NC_003521.1 + 149071 0.67 0.99975
Target:  5'- --cGACGCgGcCGCGCUCUCGCa--- -3'
miRNA:   3'- guuUUGUGgCaGUGUGAGAGUGcuag -5'
13939 5' -48 NC_003521.1 + 264 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 240813 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 52605 0.68 0.999604
Target:  5'- cCGAAAgGCCGgcagUACGCUCUC-CGGa- -3'
miRNA:   3'- -GUUUUgUGGCa---GUGUGAGAGuGCUag -5'
13939 5' -48 NC_003521.1 + 39814 0.68 0.999604
Target:  5'- uGGGAC-CCGUCuuggACAgUCUCGCGcgCg -3'
miRNA:   3'- gUUUUGuGGCAG----UGUgAGAGUGCuaG- -5'
13939 5' -48 NC_003521.1 + 57852 0.68 0.999506
Target:  5'- -cGAACGCCGUCGCuGCUagaCACGGauUCg -3'
miRNA:   3'- guUUUGUGGCAGUG-UGAga-GUGCU--AG- -5'
13939 5' -48 NC_003521.1 + 226532 0.68 0.999662
Target:  5'- uGAAACACCacGUaggcguggagaugaCGCugUCgUCACGAUCg -3'
miRNA:   3'- gUUUUGUGG--CA--------------GUGugAG-AGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 47150 0.69 0.998364
Target:  5'- -uAGACGCCGcCGCGCUUgccgacgagCACGAUg -3'
miRNA:   3'- guUUUGUGGCaGUGUGAGa--------GUGCUAg -5'
13939 5' -48 NC_003521.1 + 89576 0.66 0.999959
Target:  5'- cCGAAACGCCGUUuauCGC-CUCgccaaaccgcgaaACGGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGu--GUGaGAG-------------UGCUAG- -5'
13939 5' -48 NC_003521.1 + 223949 0.66 0.99996
Target:  5'- cCAGAugGCCG-UACACUUcgauguaGCGGUCg -3'
miRNA:   3'- -GUUUugUGGCaGUGUGAGag-----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 19807 0.66 0.99996
Target:  5'- -cGAGCGCCGUCGCAgUUCUgGCcuccuAUCg -3'
miRNA:   3'- guUUUGUGGCAGUGU-GAGAgUGc----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.