miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 73476 0.7 0.99804
Target:  5'- aGAGGCGCCG-CAgGCgCUCGgGGUCg -3'
miRNA:   3'- gUUUUGUGGCaGUgUGaGAGUgCUAG- -5'
13939 5' -48 NC_003521.1 + 106873 0.75 0.956824
Target:  5'- --uGGCAUCGUCcCACgaugCUCACGGUCc -3'
miRNA:   3'- guuUUGUGGCAGuGUGa---GAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 160507 0.66 0.999978
Target:  5'- aGAAGCGCgCG-CGC-CUUUCACGAg- -3'
miRNA:   3'- gUUUUGUG-GCaGUGuGAGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 6593 0.66 0.99996
Target:  5'- --uGGCGCgCGUUAuccuCAgUCUCAUGAUCa -3'
miRNA:   3'- guuUUGUG-GCAGU----GUgAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 151030 0.67 0.999847
Target:  5'- cCGGGACGCCGaCGCGCUC--GCGGa- -3'
miRNA:   3'- -GUUUUGUGGCaGUGUGAGagUGCUag -5'
13939 5' -48 NC_003521.1 + 214613 0.81 0.746707
Target:  5'- gGGAGCACCGccugCGCGCUCUCugGcgCg -3'
miRNA:   3'- gUUUUGUGGCa---GUGUGAGAGugCuaG- -5'
13939 5' -48 NC_003521.1 + 227338 0.66 0.99996
Target:  5'- -----gACCGUCAuCugUCUCgacuGCGGUCc -3'
miRNA:   3'- guuuugUGGCAGU-GugAGAG----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 75090 0.82 0.675178
Target:  5'- gCGGGACGCCGUCGCGCUCggCGCcGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGa-GUGcUAG- -5'
13939 5' -48 NC_003521.1 + 6760 1.09 0.026367
Target:  5'- uCAAAACACCGUCACACUCUCACGAUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 57164 0.67 0.999881
Target:  5'- --cGGCGCUGUCGCgacggccaGCUCUCGCuuUCc -3'
miRNA:   3'- guuUUGUGGCAGUG--------UGAGAGUGcuAG- -5'
13939 5' -48 NC_003521.1 + 105193 0.66 0.999978
Target:  5'- --cGACGgCGUCGCGCUCgucgUCAUcGUCg -3'
miRNA:   3'- guuUUGUgGCAGUGUGAG----AGUGcUAG- -5'
13939 5' -48 NC_003521.1 + 116035 0.68 0.999247
Target:  5'- ---uGCGCCGUCACACcggcCUUcUGAUCu -3'
miRNA:   3'- guuuUGUGGCAGUGUGa---GAGuGCUAG- -5'
13939 5' -48 NC_003521.1 + 24678 0.67 0.999908
Target:  5'- ---uGCGCCGUCugGCUUUCuAUGcUCc -3'
miRNA:   3'- guuuUGUGGCAGugUGAGAG-UGCuAG- -5'
13939 5' -48 NC_003521.1 + 69672 0.66 0.999964
Target:  5'- ---cGCGCCGUCACcgucccgcgucugcuGCgUCUCACGuggCa -3'
miRNA:   3'- guuuUGUGGCAGUG---------------UG-AGAGUGCua-G- -5'
13939 5' -48 NC_003521.1 + 12984 0.66 0.99997
Target:  5'- aUAGAACauACCGUUggcaACGCUCgcguuaccCGCGGUCg -3'
miRNA:   3'- -GUUUUG--UGGCAG----UGUGAGa-------GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 170770 0.71 0.995076
Target:  5'- ---cACGCCGUCAUGuCUCcccucgugacgaucuUCGCGAUCg -3'
miRNA:   3'- guuuUGUGGCAGUGU-GAG---------------AGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 184318 0.74 0.96058
Target:  5'- uCAGAACGCCGUCcagcugcuguGCGCgagggCUCGCGAc- -3'
miRNA:   3'- -GUUUUGUGGCAG----------UGUGa----GAGUGCUag -5'
13939 5' -48 NC_003521.1 + 47150 0.69 0.998364
Target:  5'- -uAGACGCCGcCGCGCUUgccgacgagCACGAUg -3'
miRNA:   3'- guUUUGUGGCaGUGUGAGa--------GUGCUAg -5'
13939 5' -48 NC_003521.1 + 240813 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 264 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.