miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 6760 1.09 0.026367
Target:  5'- uCAAAACACCGUCACACUCUCACGAUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 151030 0.67 0.999847
Target:  5'- cCGGGACGCCGaCGCGCUC--GCGGa- -3'
miRNA:   3'- -GUUUUGUGGCaGUGUGAGagUGCUag -5'
13939 5' -48 NC_003521.1 + 42447 0.67 0.999881
Target:  5'- gGAAACGCCGU-GCugUCUgCACGugguuuUCg -3'
miRNA:   3'- gUUUUGUGGCAgUGugAGA-GUGCu-----AG- -5'
13939 5' -48 NC_003521.1 + 13540 0.66 0.999978
Target:  5'- gAAGACGCCGUCACccaccauacaGCUacacaGCGAUa -3'
miRNA:   3'- gUUUUGUGGCAGUG----------UGAgag--UGCUAg -5'
13939 5' -48 NC_003521.1 + 184318 0.74 0.96058
Target:  5'- uCAGAACGCCGUCcagcugcuguGCGCgagggCUCGCGAc- -3'
miRNA:   3'- -GUUUUGUGGCAG----------UGUGa----GAGUGCUag -5'
13939 5' -48 NC_003521.1 + 215300 0.74 0.964103
Target:  5'- --uGGCcCUGUCGCACUUUCACGAg- -3'
miRNA:   3'- guuUUGuGGCAGUGUGAGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 170770 0.71 0.995076
Target:  5'- ---cACGCCGUCAUGuCUCcccucgugacgaucuUCGCGAUCg -3'
miRNA:   3'- guuuUGUGGCAGUGU-GAG---------------AGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 193138 0.7 0.99673
Target:  5'- ----cCGCCGUCGCGCUCggaagcacaagUCGCGGcgUCg -3'
miRNA:   3'- guuuuGUGGCAGUGUGAG-----------AGUGCU--AG- -5'
13939 5' -48 NC_003521.1 + 116035 0.68 0.999247
Target:  5'- ---uGCGCCGUCACACcggcCUUcUGAUCu -3'
miRNA:   3'- guuuUGUGGCAGUGUGa---GAGuGCUAG- -5'
13939 5' -48 NC_003521.1 + 200502 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 36679 0.68 0.999388
Target:  5'- aCGAGGCcuucuCCGUCACGCUCgaggCGCuGUUg -3'
miRNA:   3'- -GUUUUGu----GGCAGUGUGAGa---GUGcUAG- -5'
13939 5' -48 NC_003521.1 + 73476 0.7 0.99804
Target:  5'- aGAGGCGCCG-CAgGCgCUCGgGGUCg -3'
miRNA:   3'- gUUUUGUGGCaGUgUGaGAGUgCUAG- -5'
13939 5' -48 NC_003521.1 + 75090 0.82 0.675178
Target:  5'- gCGGGACGCCGUCGCGCUCggCGCcGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGa-GUGcUAG- -5'
13939 5' -48 NC_003521.1 + 119714 0.68 0.999506
Target:  5'- ---cACACUGUCGCGcCUCcaUCGCGAg- -3'
miRNA:   3'- guuuUGUGGCAGUGU-GAG--AGUGCUag -5'
13939 5' -48 NC_003521.1 + 214613 0.81 0.746707
Target:  5'- gGGAGCACCGccugCGCGCUCUCugGcgCg -3'
miRNA:   3'- gUUUUGUGGCa---GUGUGAGAGugCuaG- -5'
13939 5' -48 NC_003521.1 + 181943 0.7 0.997664
Target:  5'- aUAAAGCuGCCGUCu--CUCUC-CGAUCu -3'
miRNA:   3'- -GUUUUG-UGGCAGuguGAGAGuGCUAG- -5'
13939 5' -48 NC_003521.1 + 101239 0.68 0.999684
Target:  5'- gAGAACGCCGUgCGCGC-CgggCACGGc- -3'
miRNA:   3'- gUUUUGUGGCA-GUGUGaGa--GUGCUag -5'
13939 5' -48 NC_003521.1 + 57164 0.67 0.999881
Target:  5'- --cGGCGCUGUCGCgacggccaGCUCUCGCuuUCc -3'
miRNA:   3'- guuUUGUGGCAGUG--------UGAGAGUGcuAG- -5'
13939 5' -48 NC_003521.1 + 106873 0.75 0.956824
Target:  5'- --uGGCAUCGUCcCACgaugCUCACGGUCc -3'
miRNA:   3'- guuUUGUGGCAGuGUGa---GAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 145912 0.71 0.993936
Target:  5'- gAGGGCACC-UCGCGCUCggCGCGGa- -3'
miRNA:   3'- gUUUUGUGGcAGUGUGAGa-GUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.