miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 85800 0.7 0.99804
Target:  5'- aCAAGACGUCGUCACGCUCgggaaaguccCGCGGg- -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGa---------GUGCUag -5'
13939 5' -48 NC_003521.1 + 193138 0.7 0.99673
Target:  5'- ----cCGCCGUCGCGCUCggaagcacaagUCGCGGcgUCg -3'
miRNA:   3'- guuuuGUGGCAGUGUGAG-----------AGUGCU--AG- -5'
13939 5' -48 NC_003521.1 + 73476 0.7 0.99804
Target:  5'- aGAGGCGCCG-CAgGCgCUCGgGGUCg -3'
miRNA:   3'- gUUUUGUGGCaGUgUGaGAGUgCUAG- -5'
13939 5' -48 NC_003521.1 + 181943 0.7 0.997664
Target:  5'- aUAAAGCuGCCGUCu--CUCUC-CGAUCu -3'
miRNA:   3'- -GUUUUG-UGGCAGuguGAGAGuGCUAG- -5'
13939 5' -48 NC_003521.1 + 47150 0.69 0.998364
Target:  5'- -uAGACGCCGcCGCGCUUgccgacgagCACGAUg -3'
miRNA:   3'- guUUUGUGGCaGUGUGAGa--------GUGCUAg -5'
13939 5' -48 NC_003521.1 + 186981 0.69 0.998641
Target:  5'- gAGGACGCCGUCGCGCggaaagUCAgCGAg- -3'
miRNA:   3'- gUUUUGUGGCAGUGUGag----AGU-GCUag -5'
13939 5' -48 NC_003521.1 + 195860 0.69 0.998878
Target:  5'- --cAGCGCUGUCGCcucGCUCUCGgGAc- -3'
miRNA:   3'- guuUUGUGGCAGUG---UGAGAGUgCUag -5'
13939 5' -48 NC_003521.1 + 122884 0.69 0.999078
Target:  5'- --cGACGCCGUCAC-CgCUCGCGuugCu -3'
miRNA:   3'- guuUUGUGGCAGUGuGaGAGUGCua-G- -5'
13939 5' -48 NC_003521.1 + 39296 0.69 0.998364
Target:  5'- --cAGCGgCGUCACACUCUCccaggcagcaucGCGAc- -3'
miRNA:   3'- guuUUGUgGCAGUGUGAGAG------------UGCUag -5'
13939 5' -48 NC_003521.1 + 143751 0.68 0.999388
Target:  5'- --uAGCACCGUCucGCuguGCUUgcgCGCGAUCu -3'
miRNA:   3'- guuUUGUGGCAG--UG---UGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 116035 0.68 0.999247
Target:  5'- ---uGCGCCGUCACACcggcCUUcUGAUCu -3'
miRNA:   3'- guuuUGUGGCAGUGUGa---GAGuGCUAG- -5'
13939 5' -48 NC_003521.1 + 226532 0.68 0.999662
Target:  5'- uGAAACACCacGUaggcguggagaugaCGCugUCgUCACGAUCg -3'
miRNA:   3'- gUUUUGUGG--CA--------------GUGugAG-AGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 36679 0.68 0.999388
Target:  5'- aCGAGGCcuucuCCGUCACGCUCgaggCGCuGUUg -3'
miRNA:   3'- -GUUUUGu----GGCAGUGUGAGa---GUGcUAG- -5'
13939 5' -48 NC_003521.1 + 101239 0.68 0.999684
Target:  5'- gAGAACGCCGUgCGCGC-CgggCACGGc- -3'
miRNA:   3'- gUUUUGUGGCA-GUGUGaGa--GUGCUag -5'
13939 5' -48 NC_003521.1 + 52605 0.68 0.999604
Target:  5'- cCGAAAgGCCGgcagUACGCUCUC-CGGa- -3'
miRNA:   3'- -GUUUUgUGGCa---GUGUGAGAGuGCUag -5'
13939 5' -48 NC_003521.1 + 39814 0.68 0.999604
Target:  5'- uGGGAC-CCGUCuuggACAgUCUCGCGcgCg -3'
miRNA:   3'- gUUUUGuGGCAG----UGUgAGAGUGCuaG- -5'
13939 5' -48 NC_003521.1 + 57852 0.68 0.999506
Target:  5'- -cGAACGCCGUCGCuGCUagaCACGGauUCg -3'
miRNA:   3'- guUUUGUGGCAGUG-UGAga-GUGCU--AG- -5'
13939 5' -48 NC_003521.1 + 88954 0.68 0.999247
Target:  5'- gAGAGCGCCGcCAgAacCUCUCGCG-UCu -3'
miRNA:   3'- gUUUUGUGGCaGUgU--GAGAGUGCuAG- -5'
13939 5' -48 NC_003521.1 + 119714 0.68 0.999506
Target:  5'- ---cACACUGUCGCGcCUCcaUCGCGAg- -3'
miRNA:   3'- guuuUGUGGCAGUGU-GAG--AGUGCUag -5'
13939 5' -48 NC_003521.1 + 123163 0.68 0.999506
Target:  5'- aGAAGgGCCGgCGCACcgUCUCGCGGc- -3'
miRNA:   3'- gUUUUgUGGCaGUGUG--AGAGUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.