miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 6760 1.09 0.026367
Target:  5'- uCAAAACACCGUCACACUCUCACGAUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 75090 0.82 0.675178
Target:  5'- gCGGGACGCCGUCGCGCUCggCGCcGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGa-GUGcUAG- -5'
13939 5' -48 NC_003521.1 + 214613 0.81 0.746707
Target:  5'- gGGAGCACCGccugCGCGCUCUCugGcgCg -3'
miRNA:   3'- gUUUUGUGGCa---GUGUGAGAGugCuaG- -5'
13939 5' -48 NC_003521.1 + 106873 0.75 0.956824
Target:  5'- --uGGCAUCGUCcCACgaugCUCACGGUCc -3'
miRNA:   3'- guuUUGUGGCAGuGUGa---GAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 141676 0.75 0.939394
Target:  5'- uCAGAGCACCGUCuCGCUCuuccccguuuaUCACG-UCg -3'
miRNA:   3'- -GUUUUGUGGCAGuGUGAG-----------AGUGCuAG- -5'
13939 5' -48 NC_003521.1 + 114030 0.75 0.948598
Target:  5'- -cGAugACCGUCGCGCUCUCcuccuCGAc- -3'
miRNA:   3'- guUUugUGGCAGUGUGAGAGu----GCUag -5'
13939 5' -48 NC_003521.1 + 102491 0.75 0.948598
Target:  5'- cCGAGACGCCGUCGCGCagC-CGCaGGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGa-GaGUG-CUAG- -5'
13939 5' -48 NC_003521.1 + 198222 0.75 0.952832
Target:  5'- ----gUACCGUCACGCUgUCGCGcuAUCa -3'
miRNA:   3'- guuuuGUGGCAGUGUGAgAGUGC--UAG- -5'
13939 5' -48 NC_003521.1 + 215300 0.74 0.964103
Target:  5'- --uGGCcCUGUCGCACUUUCACGAg- -3'
miRNA:   3'- guuUUGuGGCAGUGUGAGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 184318 0.74 0.96058
Target:  5'- uCAGAACGCCGUCcagcugcuguGCGCgagggCUCGCGAc- -3'
miRNA:   3'- -GUUUUGUGGCAG----------UGUGa----GAGUGCUag -5'
13939 5' -48 NC_003521.1 + 116709 0.74 0.9674
Target:  5'- gGAAGCGCCGUC-CACUUcCACGGc- -3'
miRNA:   3'- gUUUUGUGGCAGuGUGAGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 52909 0.71 0.99195
Target:  5'- uCAAGACGCaCGUCGuCAUcgaCUCGCGAUUg -3'
miRNA:   3'- -GUUUUGUG-GCAGU-GUGa--GAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 170770 0.71 0.995076
Target:  5'- ---cACGCCGUCAUGuCUCcccucgugacgaucuUCGCGAUCg -3'
miRNA:   3'- guuuUGUGGCAGUGU-GAG---------------AGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 145912 0.71 0.993936
Target:  5'- gAGGGCACC-UCGCGCUCggCGCGGa- -3'
miRNA:   3'- gUUUUGUGGcAGUGUGAGa-GUGCUag -5'
13939 5' -48 NC_003521.1 + 61090 0.71 0.99477
Target:  5'- gGAGAuCGCCGUCAUcCUCUCGCa--- -3'
miRNA:   3'- gUUUU-GUGGCAGUGuGAGAGUGcuag -5'
13939 5' -48 NC_003521.1 + 11204 0.71 0.99477
Target:  5'- uCAGA--GCCGUCGCGC-CUCACG-UCc -3'
miRNA:   3'- -GUUUugUGGCAGUGUGaGAGUGCuAG- -5'
13939 5' -48 NC_003521.1 + 57677 0.71 0.992999
Target:  5'- --cGACACCGUCugGgUCUgCACGGg- -3'
miRNA:   3'- guuUUGUGGCAGugUgAGA-GUGCUag -5'
13939 5' -48 NC_003521.1 + 57610 0.71 0.99195
Target:  5'- uCAGcgUGCCGUCGCGCUCcaggCACG-UCa -3'
miRNA:   3'- -GUUuuGUGGCAGUGUGAGa---GUGCuAG- -5'
13939 5' -48 NC_003521.1 + 194515 0.71 0.995508
Target:  5'- aAGAugGCCGUCAUAgaUUCgcuGCGAUCg -3'
miRNA:   3'- gUUUugUGGCAGUGUgaGAG---UGCUAG- -5'
13939 5' -48 NC_003521.1 + 85800 0.7 0.99804
Target:  5'- aCAAGACGUCGUCACGCUCgggaaaguccCGCGGg- -3'
miRNA:   3'- -GUUUUGUGGCAGUGUGAGa---------GUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.