Results 41 - 60 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 165792 | 0.7 | 0.777134 |
Target: 5'- gCCCGCUGGCGC-UGCcgUCGcaguagggGUCCu -3' miRNA: 3'- gGGGCGGCCGCGuACGa-GGCaa------UAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 116161 | 0.7 | 0.777134 |
Target: 5'- aCuuGCCGGUGCGcaccugcugcUGCUCCuGUgg-CCg -3' miRNA: 3'- gGggCGGCCGCGU----------ACGAGG-CAauaGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 33511 | 0.7 | 0.777134 |
Target: 5'- gCCUGCUGGCGUGUGCcagcucaacgCCGgcugcaagAUCCg -3' miRNA: 3'- gGGGCGGCCGCGUACGa---------GGCaa------UAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 28573 | 0.7 | 0.785898 |
Target: 5'- gCCgCGCCGGggucgcugcCGC-UGCUCuCGUUGUCg -3' miRNA: 3'- -GGgGCGGCC---------GCGuACGAG-GCAAUAGg -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 130254 | 0.7 | 0.785898 |
Target: 5'- gCCgCCGCCGGCGCAgcgGCagCGacgGUgCa -3' miRNA: 3'- -GG-GGCGGCCGCGUa--CGagGCaa-UAgG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 99017 | 0.7 | 0.785898 |
Target: 5'- gUCuuGUagacgaUGGCGCcgGCUCCGggccgGUCCg -3' miRNA: 3'- -GGggCG------GCCGCGuaCGAGGCaa---UAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 105594 | 0.7 | 0.785898 |
Target: 5'- gCCgCCGCCGGCGCAgccGCUCaGgcg-CUg -3' miRNA: 3'- -GG-GGCGGCCGCGUa--CGAGgCaauaGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 114551 | 0.7 | 0.785898 |
Target: 5'- uUCCGCUGGCGCG-GUUgCGagAUCCc -3' miRNA: 3'- gGGGCGGCCGCGUaCGAgGCaaUAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 17137 | 0.7 | 0.794537 |
Target: 5'- aUCCUGCCGGCGC--GCUUCGc---CCg -3' miRNA: 3'- -GGGGCGGCCGCGuaCGAGGCaauaGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 224416 | 0.69 | 0.809751 |
Target: 5'- aCCUCGCCGGC-CAggcGCUgCGUggugggcgagcgGUCCa -3' miRNA: 3'- -GGGGCGGCCGcGUa--CGAgGCAa-----------UAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 39582 | 0.69 | 0.811413 |
Target: 5'- gUCCUGCCGGCGUcgGCg-----GUCCu -3' miRNA: 3'- -GGGGCGGCCGCGuaCGaggcaaUAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 149892 | 0.69 | 0.811413 |
Target: 5'- aCCUCGCCGGCGgCGUccaGCgCCGUU-UCg -3' miRNA: 3'- -GGGGCGGCCGC-GUA---CGaGGCAAuAGg -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 98397 | 0.69 | 0.819636 |
Target: 5'- gCUUCGgCGGCGC-UGCUgCUGUuauUGUCCg -3' miRNA: 3'- -GGGGCgGCCGCGuACGA-GGCA---AUAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 29752 | 0.69 | 0.819636 |
Target: 5'- gUCCCGCgGGCGCGaGUggUUGggGUCCc -3' miRNA: 3'- -GGGGCGgCCGCGUaCGa-GGCaaUAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 136821 | 0.69 | 0.819636 |
Target: 5'- aCCCCGgCGuGCGCAUGUacuacgCCGUcuUCa -3' miRNA: 3'- -GGGGCgGC-CGCGUACGa-----GGCAauAGg -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 233360 | 0.69 | 0.827705 |
Target: 5'- gCCUGCUGGaucCGCGgaUGCgucgCCGggAUCCg -3' miRNA: 3'- gGGGCGGCC---GCGU--ACGa---GGCaaUAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 69112 | 0.69 | 0.827705 |
Target: 5'- aCCaCGCCGGCGaCGUGa--CGUUGUUUg -3' miRNA: 3'- gGG-GCGGCCGC-GUACgagGCAAUAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 192129 | 0.69 | 0.827705 |
Target: 5'- gCCUCGUCGGCuccGUcgGCgUCCGcggAUCCa -3' miRNA: 3'- -GGGGCGGCCG---CGuaCG-AGGCaa-UAGG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 112392 | 0.69 | 0.835615 |
Target: 5'- aCCUgGCUGGCGCAgUGCgCCGaccggCCg -3' miRNA: 3'- -GGGgCGGCCGCGU-ACGaGGCaaua-GG- -5' |
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13940 | 3' | -57.7 | NC_003521.1 | + | 179261 | 0.69 | 0.835615 |
Target: 5'- aCUCGCCGGCcaGCAgcguuacCUCCGUUAcguugaUCCu -3' miRNA: 3'- gGGGCGGCCG--CGUac-----GAGGCAAU------AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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