miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 63087 0.72 0.674755
Target:  5'- gCUgCGCCGGCGCGcUGC-CCGcccUCCa -3'
miRNA:   3'- -GGgGCGGCCGCGU-ACGaGGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 71181 0.72 0.674755
Target:  5'- aCCCUGCUGGCGCugacgGCUCUGa----- -3'
miRNA:   3'- -GGGGCGGCCGCGua---CGAGGCaauagg -5'
13940 3' -57.7 NC_003521.1 + 117154 0.72 0.684372
Target:  5'- cUCCCGCCGGCGCGccGCcgcagCCGcg--CCa -3'
miRNA:   3'- -GGGGCGGCCGCGUa-CGa----GGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 120056 0.71 0.693951
Target:  5'- gCCCCGCUGGCGCcggaagGUGgaCCGcag-CCu -3'
miRNA:   3'- -GGGGCGGCCGCG------UACgaGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 154484 0.71 0.693951
Target:  5'- -aCCGCCGGCGCcgGCaagaccUCCagcAUCCa -3'
miRNA:   3'- ggGGCGGCCGCGuaCG------AGGcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 55180 0.71 0.700628
Target:  5'- gCCCaCGCCGGCGCugauccugcaaacgGUGCgcagCCacugcgUGUCCa -3'
miRNA:   3'- -GGG-GCGGCCGCG--------------UACGa---GGca----AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 204558 0.71 0.71296
Target:  5'- aCCCGCCGGuCGUcgGCaugCCGgucaUGUCg -3'
miRNA:   3'- gGGGCGGCC-GCGuaCGa--GGCa---AUAGg -5'
13940 3' -57.7 NC_003521.1 + 88733 0.71 0.722376
Target:  5'- uCCUCgcagaGCCGGCGCAcGUcgCCGUgGUCCu -3'
miRNA:   3'- -GGGG-----CGGCCGCGUaCGa-GGCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 119477 0.71 0.731723
Target:  5'- -gCCGCgCGGgGCGUGCagggugaagCCGUUGUCg -3'
miRNA:   3'- ggGGCG-GCCgCGUACGa--------GGCAAUAGg -5'
13940 3' -57.7 NC_003521.1 + 197456 0.71 0.740991
Target:  5'- --gCGCCaGCGCAUGCUCUGgcggaUGUUCa -3'
miRNA:   3'- gggGCGGcCGCGUACGAGGCa----AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 39278 0.71 0.740991
Target:  5'- cCUUCGgCGGCGCccGCUCCGg---CCu -3'
miRNA:   3'- -GGGGCgGCCGCGuaCGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 165074 0.71 0.740991
Target:  5'- cCCCCGCgGGCGC----UCCGggAUCg -3'
miRNA:   3'- -GGGGCGgCCGCGuacgAGGCaaUAGg -5'
13940 3' -57.7 NC_003521.1 + 4674 0.7 0.750175
Target:  5'- gUCCCGCCGGCGaCGUcGCgcggucccccCCGUcccGUCCc -3'
miRNA:   3'- -GGGGCGGCCGC-GUA-CGa---------GGCAa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 7929 0.7 0.750175
Target:  5'- gCCCGCCGGCuucaGCGUcugGCaUCUaUUGUCCa -3'
miRNA:   3'- gGGGCGGCCG----CGUA---CG-AGGcAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 143462 0.7 0.759265
Target:  5'- -aCCGCCaGCGCGUGCUCaag-AUCg -3'
miRNA:   3'- ggGGCGGcCGCGUACGAGgcaaUAGg -5'
13940 3' -57.7 NC_003521.1 + 172320 0.7 0.759265
Target:  5'- aCgCCGCUGGCGCAgGCcUCGgccGUCCu -3'
miRNA:   3'- -GgGGCGGCCGCGUaCGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 224080 0.7 0.759265
Target:  5'- gCCCGCgguggcggCGGCGCAgGC-CCGUcGUCUg -3'
miRNA:   3'- gGGGCG--------GCCGCGUaCGaGGCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 24691 0.7 0.762873
Target:  5'- gCCCGCCGGCcccuGCGccgucuggcuuucuaUGCUCCGcgggCCc -3'
miRNA:   3'- gGGGCGGCCG----CGU---------------ACGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 235761 0.7 0.768254
Target:  5'- gCCCCGCCGGCcGCGa-CUCCGg----- -3'
miRNA:   3'- -GGGGCGGCCG-CGUacGAGGCaauagg -5'
13940 3' -57.7 NC_003521.1 + 16847 0.7 0.773596
Target:  5'- uCCUCGCCGGCGCAgGCggacgucuacgaCGUgcguUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGUaCGag----------GCAau--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.