miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 27765 0.68 0.858321
Target:  5'- gUCCCGaCGGCGCA-GCUCCucgcGUCg -3'
miRNA:   3'- -GGGGCgGCCGCGUaCGAGGcaa-UAGg -5'
13940 3' -57.7 NC_003521.1 + 28573 0.7 0.785898
Target:  5'- gCCgCGCCGGggucgcugcCGC-UGCUCuCGUUGUCg -3'
miRNA:   3'- -GGgGCGGCC---------GCGuACGAG-GCAAUAGg -5'
13940 3' -57.7 NC_003521.1 + 29752 0.69 0.819636
Target:  5'- gUCCCGCgGGCGCGaGUggUUGggGUCCc -3'
miRNA:   3'- -GGGGCGgCCGCGUaCGa-GGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 30079 0.66 0.936286
Target:  5'- uCCCCGCCGGCc---GCUCaCGgUAgcagcgCCg -3'
miRNA:   3'- -GGGGCGGCCGcguaCGAG-GCaAUa-----GG- -5'
13940 3' -57.7 NC_003521.1 + 30355 0.66 0.931552
Target:  5'- gCCC-UCGGCGC-UGCUaCCGUgagcggCCg -3'
miRNA:   3'- gGGGcGGCCGCGuACGA-GGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 30589 0.67 0.892433
Target:  5'- aCUCGCUGGCGCAguUGCUggagCGcgGUCUg -3'
miRNA:   3'- gGGGCGGCCGCGU--ACGAg---GCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 31269 0.68 0.87255
Target:  5'- uCCUCGCCGGCGCcgucgucGCcccaUCCcg-AUCCg -3'
miRNA:   3'- -GGGGCGGCCGCGua-----CG----AGGcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 31375 0.67 0.898654
Target:  5'- aCgUCGCCGGacaGCAUGCguacacacgCCGUuUGUUCg -3'
miRNA:   3'- -GgGGCGGCCg--CGUACGa--------GGCA-AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 32615 0.68 0.850929
Target:  5'- gCCCCGUCc-CGCcgGCUCCGgcaaacguUCCa -3'
miRNA:   3'- -GGGGCGGccGCGuaCGAGGCaau-----AGG- -5'
13940 3' -57.7 NC_003521.1 + 32888 0.72 0.674755
Target:  5'- gCgCCGCCGGUGC-UGCcgCCGUgcccgCCg -3'
miRNA:   3'- -GgGGCGGCCGCGuACGa-GGCAaua--GG- -5'
13940 3' -57.7 NC_003521.1 + 33243 0.73 0.597291
Target:  5'- aUCCGCCaGgGCuccuucugGUUCCGUUGUCCg -3'
miRNA:   3'- gGGGCGGcCgCGua------CGAGGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 33511 0.7 0.777134
Target:  5'- gCCUGCUGGCGUGUGCcagcucaacgCCGgcugcaagAUCCg -3'
miRNA:   3'- gGGGCGGCCGCGUACGa---------GGCaa------UAGG- -5'
13940 3' -57.7 NC_003521.1 + 34978 0.66 0.945112
Target:  5'- -aUCGCgGGCGCAgaagGuCUCCGggG-CCa -3'
miRNA:   3'- ggGGCGgCCGCGUa---C-GAGGCaaUaGG- -5'
13940 3' -57.7 NC_003521.1 + 38318 0.72 0.665107
Target:  5'- cCCCUGUacaGGCGCGUaaaGCUaCCGUUA-CCg -3'
miRNA:   3'- -GGGGCGg--CCGCGUA---CGA-GGCAAUaGG- -5'
13940 3' -57.7 NC_003521.1 + 39278 0.71 0.740991
Target:  5'- cCUUCGgCGGCGCccGCUCCGg---CCu -3'
miRNA:   3'- -GGGGCgGCCGCGuaCGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 39582 0.69 0.811413
Target:  5'- gUCCUGCCGGCGUcgGCg-----GUCCu -3'
miRNA:   3'- -GGGGCGGCCGCGuaCGaggcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 42975 0.68 0.871161
Target:  5'- aCCCGCCGGCGCccaccgacgaccUGCagacggCCGU-GUCg -3'
miRNA:   3'- gGGGCGGCCGCGu-----------ACGa-----GGCAaUAGg -5'
13940 3' -57.7 NC_003521.1 + 43834 0.66 0.921441
Target:  5'- gCCgCCGCCGGcCGCggGC-CCGUc---- -3'
miRNA:   3'- -GG-GGCGGCC-GCGuaCGaGGCAauagg -5'
13940 3' -57.7 NC_003521.1 + 45575 0.67 0.904668
Target:  5'- -gCCGUCGGCcaGCucggGCUCCGgc-UCCu -3'
miRNA:   3'- ggGGCGGCCG--CGua--CGAGGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 45801 0.69 0.835615
Target:  5'- gCCgCCGCUgacggGGCGCccGCUCCaa-GUCCa -3'
miRNA:   3'- -GG-GGCGG-----CCGCGuaCGAGGcaaUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.