miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 533 0.66 0.926604
Target:  5'- aUCCGCgcagcgagugUGGCGCGUGUuugCCGUgg-CCg -3'
miRNA:   3'- gGGGCG----------GCCGCGUACGa--GGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 4350 0.67 0.886005
Target:  5'- aCCgCCGCCGGCGguUcGCUCaucgCGgcccgcGUCCc -3'
miRNA:   3'- -GG-GGCGGCCGCguA-CGAG----GCaa----UAGG- -5'
13940 3' -57.7 NC_003521.1 + 4395 0.66 0.926604
Target:  5'- -gCCGCCGGCcc--GCUCCcgUAUCCc -3'
miRNA:   3'- ggGGCGGCCGcguaCGAGGcaAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 4674 0.7 0.750175
Target:  5'- gUCCCGCCGGCGaCGUcGCgcggucccccCCGUcccGUCCc -3'
miRNA:   3'- -GGGGCGGCCGC-GUA-CGa---------GGCAa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 4801 0.67 0.904668
Target:  5'- uCCCCGgggacCCuGCGCGUGaucgCCGUUuuUCCg -3'
miRNA:   3'- -GGGGC-----GGcCGCGUACga--GGCAAu-AGG- -5'
13940 3' -57.7 NC_003521.1 + 4847 0.69 0.838732
Target:  5'- gCCCguuagcaaaccggagGCCGGCGUGUGCcCCGg---CCg -3'
miRNA:   3'- gGGG---------------CGGCCGCGUACGaGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 6420 0.66 0.945112
Target:  5'- gCCCCGCCaGGgGUugcUGCUCU----UCCu -3'
miRNA:   3'- -GGGGCGG-CCgCGu--ACGAGGcaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 6623 0.68 0.858321
Target:  5'- aCCCCGaCCGGC-Cc--CUCUGggAUCCg -3'
miRNA:   3'- -GGGGC-GGCCGcGuacGAGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 7710 0.69 0.835615
Target:  5'- gUCCCGCgUGGUGCuGUGCgCCGc-GUCCg -3'
miRNA:   3'- -GGGGCG-GCCGCG-UACGaGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 7929 0.7 0.750175
Target:  5'- gCCCGCCGGCuucaGCGUcugGCaUCUaUUGUCCa -3'
miRNA:   3'- gGGGCGGCCG----CGUA---CG-AGGcAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 10748 1.12 0.00247
Target:  5'- uCCCCGCCGGCGCAUGCUCCGUUAUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGUACGAGGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 16847 0.7 0.773596
Target:  5'- uCCUCGCCGGCGCAgGCggacgucuacgaCGUgcguUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGUaCGag----------GCAau--AGG- -5'
13940 3' -57.7 NC_003521.1 + 17107 0.66 0.945112
Target:  5'- gUCCGCCuGCGCcgGCgaggaCGgucgGUCCu -3'
miRNA:   3'- gGGGCGGcCGCGuaCGag---GCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 17137 0.7 0.794537
Target:  5'- aUCCUGCCGGCGC--GCUUCGc---CCg -3'
miRNA:   3'- -GGGGCGGCCGCGuaCGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 17315 0.74 0.568442
Target:  5'- -aUCGUCGGCGCugcugGUGCUgCCGUUGUCg -3'
miRNA:   3'- ggGGCGGCCGCG-----UACGA-GGCAAUAGg -5'
13940 3' -57.7 NC_003521.1 + 20707 0.66 0.931552
Target:  5'- gCCCGCCaaccuGGCGCGUGa--CGUgaugAUCg -3'
miRNA:   3'- gGGGCGG-----CCGCGUACgagGCAa---UAGg -5'
13940 3' -57.7 NC_003521.1 + 24478 0.67 0.904668
Target:  5'- aCCCGCUGGUGC-UGCUguuggacgaCGU--UCCg -3'
miRNA:   3'- gGGGCGGCCGCGuACGAg--------GCAauAGG- -5'
13940 3' -57.7 NC_003521.1 + 24691 0.7 0.762873
Target:  5'- gCCCGCCGGCcccuGCGccgucuggcuuucuaUGCUCCGcgggCCc -3'
miRNA:   3'- gGGGCGGCCG----CGU---------------ACGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 25921 0.68 0.85905
Target:  5'- aCCUGCUGGaguucgccacacacgGUAUGCUCCGcUAUCa -3'
miRNA:   3'- gGGGCGGCCg--------------CGUACGAGGCaAUAGg -5'
13940 3' -57.7 NC_003521.1 + 27206 0.79 0.330737
Target:  5'- aCCCGCCgGGCGCGgaGCUCCGcUUGUgCa -3'
miRNA:   3'- gGGGCGG-CCGCGUa-CGAGGC-AAUAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.